RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SCMH1Q96GD3 660 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 ORAI3Q9BRQ5 295 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 IFT27Q9BW83 186 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 ACTRT3Q9BYD9 372 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.27□□□□□ -0.44
CLN3-210ENST00000563874 OR51J1Q9H342 316 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 DPAGT1Q9H3H5 408 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 SIDT1Q9NXL6 827 aaKnown RBP12.27□□□□□ -0.44
CLN3-210ENST00000563874 NKIRAS2Q9NYR9 191 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 ZMIZ1Q9ULJ6 1067 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 MT-ND4P03905 459 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 ASGR2P07307 311 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 GAAP10253 952 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 DRD5P21918 477 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 F8A1P23610 371 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 PYCR1P32322 319 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 WASP42768 502 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 ID2Q02363 134 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 TMEM52BQ4KMG9 183 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 ADAMTSL4Q6UY14 1074 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 PRSS45Q7RTY3 260 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 SHISA5Q8N114 240 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 RAB42Q8N4Z0 105 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 RFLNBQ8N5W9 214 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 OR52L1Q8NGH7 329 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 OR13C2Q8NGS9 318 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 OR51A7Q8NH64 312 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 KISS1RQ969F8 398 aaPredicted RBP12.27□□□□□ -0.45
CLN3-210ENST00000563874 ZNF681Q96N22 645 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 DPCDQ9BVM2 203 aaPredicted RBP12.27□□□□□ -0.45
CLN3-210ENST00000563874 ANKRD19PQ9H560 264 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 B3GNT2Q9NY97 397 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 MRPL15Q9P015 296 aaKnown RBP12.27□□□□□ -0.45
CLN3-210ENST00000563874 PHF11Q9UIL8 331 aa12.27□□□□□ -0.45
CLN3-210ENST00000563874 TRAV27A0A087WT01 109 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 A0A0G2JK05 382 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 OR5F1O95221 314 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 PAK4O96013 591 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 BMP7P18075 431 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 MAPK14Q16539 360 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GID4Q8IVV7 300 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 OR52E1Q8NGJ3 308 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 OR5J2Q8NH18 312 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 OTUB2Q96DC9 234 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 CD180Q99467 661 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 NDC1Q9BTX1 674 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 TRAF4Q9BUZ4 470 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 C1QTNF2Q9BXJ5 285 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 CACNG6Q9BXT2 260 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 CCDC86Q9H6F5 360 aaKnown RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 CALML5Q9NZT1 146 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 TMEM5Q9Y2B1 443 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 MDC1Q14676 2089 aaKnown RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 SLC9A3R1O14745 358 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 ANXA3P12429 323 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 IL9P15248 144 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 HTR2AP28223 471 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ZNF136P52737 540 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GALEQ14376 348 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ANGPT1Q15389 498 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 DUSP5Q16690 384 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 PRAMEF8Q5VWM4 474 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 PRAMEF7Q5VXH5 474 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ZNF687Q8N1G0 1237 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 WFIKKN2Q8TEU8 576 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 TTC9Q92623 222 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GPR137Q96N19 417 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 TEAD3Q99594 435 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 PRSS27Q9BQR3 290 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GSDMCQ9BYG8 508 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 PITHD1Q9GZP4 211 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 RNF208Q9H0X6 261 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 FBXO34Q9NWN3 711 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 DEC1Q9P2X7 70 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 C7orf66A4D0T2 115 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 CDHR4A6H8M9 788 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 BHLHE40O14503 412 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ADH1CP00326 375 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 MT-ND5P03915 603 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ANKRD34CP0C6C1 535 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 SAGP10523 405 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 ZNF81P51508 661 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ERVK-21P61565 698 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 SUZ12Q15022 739 aaKnown RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 ZSWIM7Q19AV6 140 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ACSM3Q53FZ2 586 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 MFSD12Q6NUT3 480 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 SSX6Q7RTT6 188 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 TTLQ8NG68 377 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GHSRQ92847 366 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GCDHQ92947 438 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 YIPF5Q969M3 257 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 MOAP1Q96BY2 351 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 OMA1Q96E52 524 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 HHIPL1Q96JK4 782 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 GLTPQ9NZD2 209 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 ELF5Q9UKW6 265 aaPredicted RBP12.26□□□□□ -0.45
CLN3-210ENST00000563874 TBX21Q9UL17 535 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 INSL6Q9Y581 213 aa12.26□□□□□ -0.45
CLN3-210ENST00000563874 PRR23D1E9PI22 279 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms