RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 FAM222BQ8WU58 562 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 STARD4Q96DR4 205 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 NEURL3Q96EH8 262 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 MAELQ96JY0 434 aaKnown RBP14.07□□□□□ -0.16
VPS39-203ENST00000561797 GPATCH1Q9BRR8 931 aaKnown RBP14.07□□□□□ -0.16
VPS39-203ENST00000561797 POLDIP3Q9BY77 421 aaKnown RBP14.07□□□□□ -0.16
VPS39-203ENST00000561797 NMUR2Q9GZQ4 415 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 RNF122Q9H9V4 155 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 DNAJB12Q9NXW2 375 aaKnown RBP14.07□□□□□ -0.16
VPS39-203ENST00000561797 ZNF175Q9Y473 711 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 A0A0J9YW62 118 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 CENPVL1A0A0U1RR11 272 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 SERINC4A6NH21 518 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 A8MXE2 369 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 ZNF195O14628 629 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 EFNA2O43921 213 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 CTAG2O75638 210 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 SLC22A3O75751 556 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 UGT2B17O75795 530 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 UBL4AP11441 157 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 IDO1P14902 403 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 CPOXP36551 454 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 EIF1P41567 113 aaKnown RBP14.06□□□□□ -0.16
VPS39-203ENST00000561797 KIR2DL2P43627 348 aaPredicted RBP14.06□□□□□ -0.16
VPS39-203ENST00000561797 SLC6A8P48029 635 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 SUMO3P55854 103 aaPredicted RBP14.06□□□□□ -0.16
VPS39-203ENST00000561797 FUT5Q11128 374 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 ZNF141Q15928 474 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 CTU2Q2VPK5 515 aaKnown RBP14.06□□□□□ -0.16
VPS39-203ENST00000561797 PDCD4Q53EL6 469 aaKnown RBP14.06□□□□□ -0.16
VPS39-203ENST00000561797 GPAT3Q53EU6 434 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 PDSS1Q5T2R2 415 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 HBMQ6B0K9 141 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 HMGN2P46Q86SG4 172 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 RNF130Q86XS8 419 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 TRIML2Q8N7C3 387 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 ATP6V1C2Q8NEY4 427 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 LRRC8CQ8TDW0 803 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 NRGNQ92686 78 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 ROPN1LQ96C74 230 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 ARSGQ96EG1 525 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 ZNF350Q9GZX5 532 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 OPN3Q9H1Y3 402 aaPredicted RBP14.06□□□□□ -0.16
VPS39-203ENST00000561797 WDR45Q9Y484 360 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 USH1CQ9Y6N9 552 aa14.06□□□□□ -0.16
VPS39-203ENST00000561797 A6NNC1 897 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 MSTNO14793 375 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 UBDO15205 165 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 EIF4E2O60573 245 aaKnown RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 SYNGR4O95473 234 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 CSTAP01040 98 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 EPXP11678 715 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 FCGR2AP12318 317 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 SHC1P29353 583 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 SORDQ00796 357 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 MAPK14Q16539 360 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 GSTA3Q16772 222 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 TYW3Q6IPR3 259 aaKnown RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 ESPNLQ6ZVH7 1005 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 HDXQ7Z353 690 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 GOLGA6L1Q8N7Z2 621 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 GLB1L3Q8NCI6 653 aaPredicted RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 TOR1AIP2Q8NFQ8 470 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 OR5W2Q8NH69 310 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 OR2V1Q8NHB1 315 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 PNPT1Q8TCS8 783 aaKnown RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 OSTF1Q92882 214 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 ZNF524Q96C55 264 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 ADGRG7Q96K78 797 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 KLHL15Q96M94 604 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 THUMPD3Q9BV44 507 aaKnown RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 SLCO1B3Q9NPD5 702 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 PAQR5Q9NXK6 330 aaPredicted RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 MCTS1Q9ULC4 181 aaKnown RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 CLEC4AQ9UMR7 237 aa14.05□□□□□ -0.16
VPS39-203ENST00000561797 GPC6Q9Y625 555 aaPredicted RBP14.05□□□□□ -0.16
VPS39-203ENST00000561797 MYO9AB2RTY4 2548 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 POLQO75417 2590 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 UQCRHLA0A096LP55 91 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 PRAMEF27A3QJZ7 478 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 HMGN4O00479 90 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 RFXANKO14593 260 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 ADAMDEC1O15204 470 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 KIAA0513O60268 411 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 PLGP00747 810 aaPredicted RBP14.04□□□□□ -0.16
VPS39-203ENST00000561797 IL6P05231 212 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 UBTFL6P0CB48 400 aaPredicted RBP14.04□□□□□ -0.16
VPS39-203ENST00000561797 PRKCAP17252 672 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 CARD18P57730 90 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 FAM27E3Q08E93 113 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 LRRC74AQ0VAA2 488 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 CBFBQ13951 182 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 QPRTQ15274 297 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 SYPL1Q16563 259 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 TMEM176BQ3YBM2 270 aaPredicted RBP14.04□□□□□ -0.16
VPS39-203ENST00000561797 FBXW10Q5XX13 1052 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 EPGNQ6UW88 154 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 DNAJC14Q6Y2X3 702 aaPredicted RBP14.04□□□□□ -0.16
VPS39-203ENST00000561797 FRRS1Q6ZNA5 592 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 ZNF619Q8N2I2 560 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms