RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 NLE1Q9NVX2 485 aaPredicted RBP13.1□□□□□ -0.31
CSPG4P12-202ENST00000559989 TMEM235A6NFC5 223 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 MT-ND4P03905 459 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 HBQ1P09105 142 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 LILRA4P59901 499 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 TMEM97Q5BJF2 176 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 LYRM7Q5U5X0 104 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OR4C11Q6IEV9 310 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 TXNDC5Q8NBS9 432 aaKnown RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 ZNF395Q9H8N7 513 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 USP2O75604 605 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OR2C1O95371 312 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 HOXB2P14652 356 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 AMTP48728 403 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 NFATC3Q12968 1075 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 IRF4Q15306 451 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 LPCAT3Q6P1A2 487 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OTOP2Q7RTS6 562 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 C2CD4AQ8NCU7 369 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OR13C9Q8NGT0 318 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 PRR11Q96HE9 360 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 PCLAFQ15004 111 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 ARHGAP11BQ3KRB8 267 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 SLC22A6Q4U2R8 563 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 LRRC28Q86X40 367 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 CATSPERDQ86XM0 798 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 MKXQ8IYA7 352 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 CCNL2Q96S94 520 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 DCLRE1CQ96SD1 692 aaKnown RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 CRB3Q9BUF7 120 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 V9GYS6 101 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 TGOLN2O43493 480 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 LSAMPQ13449 338 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 COTL1Q14019 142 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OR9I1Q8NGQ6 314 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 NPRL2Q8WTW4 380 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 DIO2Q92813 273 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 DEFB118Q96PH6 123 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OR5B2Q96R09 309 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 A0A1W2PPH5 198 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 XKRY2A2RUG3 117 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 CST3P01034 146 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 SERPINA2P20848 420 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 CNR1P21554 472 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 SNCAP37840 140 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 ECI1P42126 302 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 GDF5P43026 501 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 GABRA4P48169 554 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 STT3BQ8TCJ2 826 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 ENKD1Q9H0I2 346 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 MVB12BQ9H7P6 319 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 MTHFD2LQ9H903 347 aaPredicted RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OR5K4A6NMS3 321 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 OSMP13725 252 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 RAB5AP20339 215 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 GDF10P55107 478 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 ACSM3Q53FZ2 586 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 BEX5Q5H9J7 111 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 INTS5Q6P9B9 1019 aaKnown RBP13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 TECPR1Q7Z6L1 1165 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 KLHDC1Q8N7A1 406 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 LHPPQ9H008 270 aa13.09□□□□□ -0.31
CSPG4P12-202ENST00000559989 MEIOCA2RUB1 952 aa13.08□□□□□ -0.31
CSPG4P12-202ENST00000559989 TO15178 435 aa13.08□□□□□ -0.31
CSPG4P12-202ENST00000559989 CA5AP35218 305 aa13.08□□□□□ -0.31
CSPG4P12-202ENST00000559989 KCNJ8Q15842 424 aa13.08□□□□□ -0.31
CSPG4P12-202ENST00000559989 GLB1L2Q8IW92 636 aa13.08□□□□□ -0.31
CSPG4P12-202ENST00000559989 V9GY05 133 aa13.08□□□□□ -0.31
CSPG4P12-202ENST00000559989 JCADQ9P266 1359 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 PRSS44E7EML9 344 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 NUDT21O43809 227 aaKnown RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 DUSP11O75319 330 aaKnown RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 GIFP27352 417 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 PCBD1P61457 104 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 OR2M7Q8NG81 312 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 SETBP1Q9Y6X0 1596 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 RAB40ALP0C0E4 278 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 TMEM115Q12893 351 aaPredicted RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 MRPL10Q7Z7H8 261 aaKnown RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 ADGRA1Q86SQ6 560 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 SERPINA11Q86U17 422 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 RAB40AQ8WXH6 277 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 C14orf79Q96F83 325 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 ACTL7AQ9Y615 435 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 SCAMP2O15127 329 aaKnown RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 ZNF44P15621 663 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 CXADRP78310 365 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 EIF4HQ15056 248 aaKnown RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 CREB3L4Q8TEY5 395 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 SEZ6LQ9BYH1 1024 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 CHRDQ9H2X0 955 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 ZNF586Q9NXT0 402 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 PTTG3PQ9NZH4 202 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 KCNK6Q9Y257 313 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 SH2D7A6NKC9 451 aaPredicted RBP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 ANHXE9PGG2 379 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 C1GALT1C1LP0DN25 315 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 SERINC5Q86VE9 423 aa13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.08□□□□□ -0.32
CSPG4P12-202ENST00000559989 NUDT9Q9BW91 350 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms