RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 STAG3L4Q8TBR4 150 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 LCN9Q8WX39 176 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 CDKN2AIPNLQ96HQ2 116 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 ACBD6Q9BR61 282 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 FDXACB1Q9BRP7 624 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-226ENST00000556825 TM6SF2Q9BZW4 377 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 LRRN3Q9H3W5 708 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 FZD4Q9ULV1 537 aa12.9□□□□□ -0.34
SHMT2-226ENST00000556825 FNDC1Q4ZHG4 1894 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-226ENST00000556825 KANTRA0A1W2PQU2 76 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SEC14L6B5MCN3 397 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 GSTZ1O43708 216 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SOX15O60248 233 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SH3BGRLO75368 114 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 GUSBP08236 651 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 HTR6P50406 440 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 ART1P52961 327 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CDH12P55289 794 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 INSM1Q01101 510 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SPIBQ01892 262 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CXCL9Q07325 125 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SLC14A1Q13336 389 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 OCLNQ16625 522 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 RIPPLY2Q5TAB7 128 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 OR2G6Q5TZ20 316 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 ADAM5Q6NVV9 412 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 ARMCX2Q7L311 632 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CAMKMTQ7Z624 323 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 PEG10Q86TG7 708 aaKnown RBP12.89□□□□□ -0.35
SHMT2-226ENST00000556825 MTMR14Q8NCE2 650 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 OR4A4PQ8NGN8 299 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 THAP4Q8WY91 577 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 PIGKQ92643 395 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 TM4SF18Q96CE8 201 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 GAL3ST4Q96RP7 486 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 PARD6AQ9NPB6 346 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 NMRK2Q9NPI5 230 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 NDOR1Q9UHB4 597 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 NPFFR2Q9Y5X5 522 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CCDC187A0A096LP49 1063 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 NAP1L6A6NFF2 107 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CYTIPO60759 359 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CD79AP11912 226 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 DEFB115Q30KQ5 88 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 DCAF10Q5QP82 559 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 C9orf64Q5T6V5 341 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 FKBP1CQ5VVH2 108 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 OR10K2Q6IF99 312 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 JMJD6Q6NYC1 403 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CDC73Q6P1J9 531 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 CEACAM20Q6UY09 585 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 DPPA4Q7L190 304 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 KCNRGQ8N5I3 272 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 KRTCAP2Q8N6L1 136 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF321PQ8N8H1 164 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SDR9C7Q8NEX9 313 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 OR5M1Q8NGP8 315 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 ACER1Q8TDN7 264 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 NEK7Q8TDX7 302 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 TFGQ92734 400 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF382Q96SR6 550 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 WDR13Q9H1Z4 485 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM231Q9H6L2 316 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 NOX3Q9HBY0 568 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 SPG21Q9NZD8 308 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 PCDHB1Q9Y5F3 818 aa12.89□□□□□ -0.35
SHMT2-226ENST00000556825 hCG_1809904A0A1W2PP81 198 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 A0A1W2PR64 198 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 A0A1W2PRV1 198 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 CHST10O43529 356 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 FMO6PO60774 539 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 METTL15P1P0C7V9 234 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ADH6P28332 368 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ERVPABLB-1P60509 514 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 RPL38P63173 70 aaKnown RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SHC2P98077 582 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 KIAA0141Q14154 515 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF667Q5HYK9 610 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 SDHAF4Q5VUM1 108 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 DMRTA1Q5VZB9 504 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 IL34Q6ZMJ4 242 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 NR2C2APQ86WQ0 139 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 C19orf47Q8N9M1 422 aaKnown RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 OR10A7Q8NGE5 316 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 OR51S1Q8NGJ8 323 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 RNFT2Q96EX2 444 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 UTP23Q9BRU9 249 aaKnown RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 DOHHQ9BU89 302 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 OR52A5Q9H2C5 316 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 AGO4Q9HCK5 861 aaKnown RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 HRASLSQ9HDD0 168 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 MMP26Q9NRE1 261 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 MAN2C1Q9NTJ4 1040 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 TESQ9UGI8 421 aaKnown RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 C2orf92A0A1B0GVN3 265 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 M0QZK8 103 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 BCL2L11O43521 198 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ECI2O75521 394 aa12.88□□□□□ -0.35
SHMT2-226ENST00000556825 ARF4P18085 180 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-226ENST00000556825 AHRP35869 848 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms