RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 UBE2HP62256 183 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CHIT1Q13231 466 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 TRIP10Q15642 601 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CEP55Q53EZ4 464 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ASPHD2Q6ICH7 369 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CASC1Q6TDU7 716 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CBLN3Q6UW01 205 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 IGFL2Q6UWQ7 119 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 HSD17B13Q7Z5P4 300 aaPredicted RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 TMEM179BQ7Z7N9 219 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 PPP1R27Q86WC6 154 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ERI1Q8IV48 349 aaKnown RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ZDHHC21Q8IVQ6 265 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CENPLQ8N0S6 344 aaPredicted RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 OR2T33Q8NG76 320 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 FEM1AQ9BSK4 669 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CNPY3Q9BT09 278 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ZSCAN5AQ9BUG6 496 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 HES7Q9BYE0 225 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 WDR76Q9H967 626 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 COG4Q9H9E3 785 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 RRP15Q9Y3B9 282 aaKnown RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 RAI1Q7Z5J4 1906 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 WASH3PC4AMC7 463 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ANP32DO95626 131 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 CHRNA1P02708 482 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 IGLL1P15814 213 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ADORA2BP29275 332 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 DLSTP36957 453 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 RPL29P47914 159 aaKnown RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 NOVA1P51513 510 aaKnown RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 CNTN2Q02246 1040 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ZNF45Q02386 682 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 GPM6BQ13491 265 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ELAVL3Q14576 367 aaKnown RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 HERPUD1Q15011 391 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 NIPAL3Q6P499 406 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 WASH2PQ6VEQ5 465 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 CYS1Q717R9 158 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 C17orf82Q86X59 251 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 SKA3Q8IX90 412 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 OR2A12Q8NGT7 310 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 OSTF1Q92882 214 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ELSPBP1Q96BH3 223 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 FGGYQ96C11 551 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ZNF799Q96GE5 643 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ZNF285Q96NJ3 590 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 NFKBIZQ9BYH8 718 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 POLR1EQ9GZS1 481 aaKnown RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 POLR3FQ9H1D9 316 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 PTGES2Q9H7Z7 377 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 GORASP2Q9H8Y8 452 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 CAB39LQ9H9S4 337 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 LPAR2Q9HBW0 351 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 AGPAT5Q9NUQ2 364 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 SMPD3Q9NY59 655 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-221ENST00000556534 RDH8Q9NYR8 311 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 OR1A1Q9P1Q5 309 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 PRO0461Q9UI25 63 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 CYTH4Q9UIA0 394 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 B9D1Q9UPM9 204 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 CHMP2BQ9UQN3 213 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 PPIAL4AQ9Y536 164 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 MEGF6O75095 1541 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 ARHGAP23Q9P227 1491 aa3.01□□□□□ -1.93
SCFD1-221ENST00000556534 SF3B1O75533 1304 aaKnown RBP eCLIP3□□□□□ -1.93
SCFD1-221ENST00000556534 EFNA2O43921 213 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 GMFGO60234 142 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 TBX19O60806 448 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 TBL1XO60907 577 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 STX11O75558 287 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 TIMP1P01033 207 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 TNNI3P19429 210 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 FUT3P21217 361 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 VDAC1P21796 283 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 GLRA2P23416 452 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 HTR2AP28223 471 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 CYLC1P35663 651 aaPredicted RBP3□□□□□ -1.93
SCFD1-221ENST00000556534 GNPDA1P46926 289 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 ZNF133P52736 654 aaPredicted RBP3□□□□□ -1.93
SCFD1-221ENST00000556534 MRPS11P82912 194 aaKnown RBP3□□□□□ -1.93
SCFD1-221ENST00000556534 SLC36A3Q495N2 470 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 CCDC152Q4G0S7 254 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 CENPPQ6IPU0 288 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 LRRC8BQ6P9F7 803 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 CBWD2Q8IUF1 395 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 ZSCAN4Q8NAM6 433 aaPredicted RBP3□□□□□ -1.93
SCFD1-221ENST00000556534 SHC3Q92529 594 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 TTC25Q96NG3 672 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 OR51J1Q9H342 316 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 RIMS3Q9UJD0 308 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 SNX6Q9UNH7 406 aa3□□□□□ -1.93
SCFD1-221ENST00000556534 IGHV1OR15-1A0A075B7D0 117 aa2.99□□□□□ -1.93
SCFD1-221ENST00000556534 IGKV6D-21A0A0A0MT36 114 aa2.99□□□□□ -1.93
SCFD1-221ENST00000556534 IGHV7-81A0A0B4J1V7 117 aa2.99□□□□□ -1.93
SCFD1-221ENST00000556534 PINLYPA6NC86 204 aa2.99□□□□□ -1.93
SCFD1-221ENST00000556534 RTL8CO15255 209 aa2.99□□□□□ -1.93
SCFD1-221ENST00000556534 UQCRBP14927 111 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms