RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, human

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-221	ENST00000550914	PIWIL2	Q8TC59	973 aa	Known RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	PHOSPHO1	Q8TCT1	267 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	SMAP2	Q8WU79	429 aa	Predicted RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	JADE3	Q92613	823 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	KISS1R	Q969F8	398 aa	Predicted RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	FAM120B	Q96EK7	910 aa	Known RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	C16orf58	Q96GQ5	468 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	KLHDC3	Q9BQ90	382 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	SRXN1	Q9BYN0	137 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	POTEKP	Q9BYX7	375 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	GRIP2	Q9C0E4	1043 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	PIGU	Q9H490	435 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	HEATR1	Q9H583	2144 aa	Known RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	SIRT3	Q9NTG7	399 aa	Predicted RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	ZCCHC3	Q9NUD5	404 aa	Known RBP	11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	ATP6V1H	Q9UI12	483 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	MID2	Q9UJV3	735 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	ICAM5	Q9UMF0	924 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	PTGDR2	Q9Y5Y4	395 aa		11.43	□□□□□ -0.58
PTCH1-221	ENST00000550914	ETV2	O00321	342 aa	Predicted RBP	11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	EFNA2	O43921	213 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	NTN1	O95631	604 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	SOD3	P08294	240 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	KRT16	P08779	473 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	FAM153B	P0C7A2	387 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	BCKDHA	P12694	445 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	ATP6V1C1	P21283	382 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	SHC1	P29353	583 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	HPCAL1	P37235	193 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	RAC3	P60763	192 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	RPL38	P63173	70 aa	Known RBP	11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	ITGAD	Q13349	1161 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	VEZF1	Q14119	521 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	TMEM176B	Q3YBM2	270 aa	Predicted RBP	11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	FAM153C	Q494X1	144 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	ZNF672	Q499Z4	452 aa	Predicted RBP	11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	SLC25A53	Q5H9E4	307 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	CDC73	Q6P1J9	531 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914		Q6ZT83	130 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	NUFIP2	Q7Z417	695 aa	Known RBP	11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	NATD1	Q8N6N6	113 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	CCDC63	Q8NA47	563 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	CLHC1	Q8NHS4	586 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	FBXO27	Q8NI29	283 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	PSMA8	Q8TAA3	256 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	ZFP90	Q8TF47	636 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	CDS1	Q92903	461 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	GTPBP3	Q969Y2	492 aa	Known RBP	11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	MRGPRX4	Q96LA9	322 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	ACTRT3	Q9BYD9	372 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	REG4	Q9BYZ8	158 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	TUBB1	Q9H4B7	451 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	COQ10B	Q9H8M1	238 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	BCO1	Q9HAY6	547 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	KLHL9	Q9P2J3	617 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	BAIAP2L1	Q9UHR4	511 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	DNAJC15	Q9Y5T4	150 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	CUBN	O60494	3623 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	NBEAL1	Q6ZS30	2694 aa		11.42	□□□□□ -0.58
PTCH1-221	ENST00000550914	YLPM1	P49750	1951 aa	Known RBP	11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914		A0A1W2PP18	115 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	TMEM114	B3SHH9	223 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	RNF223	E7ERA6	249 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	COPE	O14579	308 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	SCAMP2	O15127	329 aa	Known RBP	11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	CLOCK	O15516	846 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	TLX2	O43763	284 aa	Predicted RBP	11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	NUDT14	O95848	222 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	ADA	P00813	363 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	FGF4	P08620	206 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	LINC00032	P0C843	101 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	PRKCA	P17252	672 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	MAPK1	P28482	360 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	SELENBP1	Q13228	472 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	LASP1	Q14847	261 aa	Known RBP	11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	KANK2	Q63ZY3	851 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	CBLN3	Q6UW01	205 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	SEZ6L2	Q6UXD5	910 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	DNM1P46	Q6ZS02	220 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	CEP112	Q8N8E3	955 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	BANP	Q8N9N5	519 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	OR56A1	Q8NGH5	318 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	GPR119	Q8TDV5	335 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	ARL8A	Q96BM9	186 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	TRIM2	Q9C040	744 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	SLCO5A1	Q9H2Y9	848 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	BARX1	Q9HBU1	254 aa	Predicted RBP	11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	CARD8	Q9Y2G2	431 aa		11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	MAGED1	Q9Y5V3	778 aa	Predicted RBP	11.41	□□□□□ -0.58
PTCH1-221	ENST00000550914	NPIPB9	F8W1W9	429 aa		11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	GTPBP1	O00178	669 aa	Known RBP	11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	EIF4E2	O60573	245 aa	Known RBP	11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	TRIM13	O60858	407 aa		11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	TP53	P04637	393 aa	Predicted RBP	11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	SLC7A1	P30825	629 aa		11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	OR3A2	P47893	321 aa		11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	CCT3	P49368	545 aa	Known RBP	11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	ATP12A	P54707	1039 aa		11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	BSPH1	Q075Z2	132 aa		11.4	□□□□□ -0.58
PTCH1-221	ENST00000550914	TSC22D1	Q15714	1073 aa		11.4	□□□□□ -0.58

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