RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KHKP50053 298 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 RNF144AP50876 292 aaPredicted RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 ZNF41P51814 821 aaPredicted RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 AGFG1P52594 562 aaKnown RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 EEFSECP57772 596 aaKnown RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 KRTAP10-9P60411 292 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 RAC1P63000 192 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 MAPK11Q15759 364 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 TOMM34Q15785 309 aaPredicted RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 NDUFAF6Q330K2 333 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 C16orf62Q7Z3J2 963 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 RNF130Q86XS8 419 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 GRAMD2AQ8IUY3 354 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 GCNT2Q8N0V5 402 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 MIER2Q8N344 545 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 TRIML2Q8N7C3 387 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 ZFP90Q8TF47 636 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 ROPN1LQ96C74 230 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 INTS12Q96CB8 462 aaKnown RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 ZNF845Q96IR2 970 aaPredicted RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 RNF145Q96MT1 663 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 EBF4Q9BQW3 602 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 CCDC28BQ9BUN5 200 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 ACBD3Q9H3P7 528 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 SLC24A3Q9HC58 644 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 MCCC2Q9HCC0 563 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 SLC52A3Q9NQ40 469 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 TCF7L2Q9NQB0 619 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 INTS9Q9NV88 658 aaKnown RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 ZNF446Q9NWS9 450 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 FOXD3Q9UJU5 478 aaPredicted RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 CELSR1Q9NYQ6 3014 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 HEATR5AQ86XA9 2040 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 FAM234BA2RU67 622 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 FAM221AA4D161 298 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 RFXANKO14593 260 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 ZNF264O43296 627 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 SEC14L5O43304 696 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 BCAS1O75363 584 aaPredicted RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 GSNP06396 782 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 UBL4AP11441 157 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 PRKCAP17252 672 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 RPS4Y1P22090 263 aaKnown RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 ADH6P28332 368 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 PGM1P36871 562 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 KIR2DL2P43627 348 aaPredicted RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 PCYT1AP49585 367 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 POLR2JP52435 117 aaKnown RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 EEF1A1P68104 462 aaKnown RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 TLE4Q04727 773 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 FOXF1Q12946 379 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 FGFBP1Q14512 234 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 GPR68Q15743 365 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 COX20Q5RI15 118 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 EEF1A1P5Q5VTE0 462 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 OR2A2Q6IF42 318 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 FUNDC1Q8IVP5 155 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 OR5W2Q8NH69 310 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 FNDC9Q8TBE3 224 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 XAGE5Q8WWM1 108 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 GTF2H4Q92759 462 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 ZG16BQ96DA0 208 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 STARD4Q96DR4 205 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 MAGEB18Q96M61 343 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 TRNT1Q96Q11 434 aaKnown RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 PINK1Q9BXM7 581 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 LAT2Q9GZY6 243 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 SLC38A1Q9H2H9 487 aa12.75□□□□□ -0.37
USP28-209ENST00000540925 GPC6Q9Y625 555 aaPredicted RBP12.75□□□□□ -0.37
USP28-209ENST00000540925 A0A0J9YW62 118 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 A8MXE2 369 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 AQP8O94778 261 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 H6PDO95479 791 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 CGAP01215 116 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 CHRM4P08173 479 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 SHC1P29353 583 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 PEX19P40855 299 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 SLC6A8P48029 635 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 SORDQ00796 357 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 PON3Q15166 354 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 TIGD2Q4W5G0 525 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 ATAD3BQ5T9A4 648 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 ZNF621Q6ZSS3 439 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 ESPNLQ6ZVH7 1005 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 ZNF619Q8N2I2 560 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 GOLGA6L1Q8N7Z2 621 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 ANKFN1Q8N957 763 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 OR10D3Q8NH80 312 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 VPS33AQ96AX1 596 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 MRGPRX4Q96LA9 322 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 PIGMQ9H3S5 423 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 TMEM45AQ9NWC5 275 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 STOML1Q9UBI4 398 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 LIPT1Q9Y234 373 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 WDR45Q9Y484 360 aa12.74□□□□□ -0.37
USP28-209ENST00000540925 DSPPQ9NZW4 1301 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 EEF1E1-BLOC1S5C9J1V9 151 aa12.73□□□□□ -0.37
USP28-209ENST00000540925 GTPBP1O00178 669 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 EIF1AYO14602 144 aaKnown RBP12.73□□□□□ -0.37
USP28-209ENST00000540925 POLR3GO15318 223 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms