RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MAD2L1Q13257 205 aaPredicted RBP13.16□□□□□ -0.3
VPS28-215ENST00000531924 TMEM176BQ3YBM2 270 aaPredicted RBP13.16□□□□□ -0.3
VPS28-215ENST00000531924 KLHL26Q53HC5 615 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 C6orf136Q5SQH8 315 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 TOR1AIP2Q8NFQ8 470 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 FBXO27Q8NI29 283 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 POC1BQ8TC44 478 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 SFXN5Q8TD22 340 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 TCP10LQ8TDR4 215 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 PLPPR2Q96GM1 343 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 MARK4Q96L34 752 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 CXorf36Q9H7Y0 433 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 NGBQ9NPG2 151 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 DTNAQ9Y4J8 743 aa13.16□□□□□ -0.3
VPS28-215ENST00000531924 KLF4O43474 513 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 CYP7B1O75881 506 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 PRKD3O94806 890 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 CAPRIN1Q14444 709 aaKnown RBP13.15□□□□□ -0.3
VPS28-215ENST00000531924 ZNF239Q16600 458 aaKnown RBP13.15□□□□□ -0.3
VPS28-215ENST00000531924 XKR7Q5GH72 579 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 EXOSC6Q5RKV6 272 aaKnown RBP13.15□□□□□ -0.3
VPS28-215ENST00000531924 C22orf34Q6ZV56 151 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 FCRLAQ7L513 359 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 KRTCAP2Q8N6L1 136 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 OR5AK3PQ8NH89 298 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 ABHD3Q8WU67 409 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 NUDT8Q8WV74 236 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 COQ8BQ96D53 544 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 COX4I2Q96KJ9 171 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 MRGPRX4Q96LA9 322 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 DUSP26Q9BV47 211 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 ROPN1BQ9BZX4 212 aaPredicted RBP13.15□□□□□ -0.3
VPS28-215ENST00000531924 BHLHE41Q9C0J9 482 aaPredicted RBP13.15□□□□□ -0.3
VPS28-215ENST00000531924 OR10A4Q9H209 315 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 ROPN1Q9HAT0 212 aaPredicted RBP13.15□□□□□ -0.3
VPS28-215ENST00000531924 KLHL13Q9P2N7 655 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 LGALS13Q9UHV8 139 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 ZDHHC2Q9UIJ5 367 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 PCDHGB4Q9UN71 923 aa13.15□□□□□ -0.3
VPS28-215ENST00000531924 NAV3Q8IVL0 2385 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 DUXAA6NLW8 204 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 ZNF264O43296 627 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 LY6G6DO95868 133 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 NUDT17P0C025 328 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 UBL4AP11441 157 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 PSMB1P20618 241 aaKnown RBP13.14□□□□□ -0.31
VPS28-215ENST00000531924 SHC1P29353 583 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 PTH2RP49190 550 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 CBFBQ13951 182 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 CBLN3Q6UW01 205 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 NUDCD3Q8IVD9 361 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 TUSC5Q8IXB3 177 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 SLC43A2Q8N370 569 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 OR5W2Q8NH69 310 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 PSMA8Q8TAA3 256 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 RNF128Q8TEB7 428 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 ZFP90Q8TF47 636 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 S100PBPQ96BU1 408 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 C3orf30Q96M34 536 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 OR7D2Q96RA2 312 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 GSX2Q9BZM3 304 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 GP6Q9HCN6 339 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 GPATCH2Q9NW75 528 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 ICAM5Q9UMF0 924 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 ACTL7BQ9Y614 415 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 KCNE3Q9Y6H6 103 aa13.14□□□□□ -0.31
VPS28-215ENST00000531924 ZNF469Q96JG9 3925 aaPredicted RBP13.14□□□□□ -0.31
VPS28-215ENST00000531924 TRIM64A6NGJ6 449 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 TRIM64BA6NI03 449 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 HS3ST1O14792 307 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 CLOCKO15516 846 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 OIP5O43482 229 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 EIF4E2O60573 245 aaKnown RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 AK1P00568 194 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 BPGMP07738 259 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 YES1P07947 543 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 G6PDP11413 515 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 PRKCAP17252 672 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 MATN1P21941 496 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 LOXP28300 417 aaPredicted RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 ATP5J2P56134 94 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 SELENBP1Q13228 472 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 GPR68Q15743 365 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 NDUFAF6Q330K2 333 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 C16orf62Q7Z3J2 963 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 CIARTQ8N365 385 aaPredicted RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 OR5D16Q8NGK9 328 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 GPR119Q8TDV5 335 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 HSD17B8Q92506 261 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 AKAP1Q92667 903 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS28-215ENST00000531924 KISS1RQ969F8 398 aaPredicted RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 USB1Q9BQ65 265 aaKnown RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 KLHDC3Q9BQ90 382 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 SRXN1Q9BYN0 137 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 ESRP2Q9H6T0 727 aaKnown RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 L2HGDHQ9H9P8 463 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 SERINC1Q9NRX5 453 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 EXD2Q9NVH0 621 aa13.13□□□□□ -0.31
VPS28-215ENST00000531924 NOP53Q9NZM5 478 aaKnown RBP13.13□□□□□ -0.31
VPS28-215ENST00000531924 KLHL9Q9P2J3 617 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms