RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FBXO34Q9NWN3 711 aa17.87■□□□□ 0.45
VPS28-213ENST00000530983 ING3Q9NXR8 418 aa17.87■□□□□ 0.45
VPS28-213ENST00000530983 CLDND1Q9NY35 253 aa17.87■□□□□ 0.45
VPS28-213ENST00000530983 COLEC10Q9Y6Z7 277 aa17.87■□□□□ 0.45
VPS28-213ENST00000530983 P2RX6O15547 441 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 ARHGEF9O43307 516 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 SLC6A1P30531 599 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 RAB25P57735 213 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 CCDC85BQ15834 202 aaPredicted RBP17.86■□□□□ 0.45
VPS28-213ENST00000530983 BTBD16Q32M84 506 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 FBXO42Q6P3S6 717 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 DTX3Q8N9I9 347 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 SLC37A3Q8NCC5 494 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 OR14C36Q8NHC7 312 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 PHOSPHO2Q8TCD6 241 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 PIGUQ9H490 435 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 ENAMQ9NRM1 1142 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 PHF11Q9UIL8 331 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 HEBP2Q9Y5Z4 205 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 MEN1O00255 615 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 PEX12O00623 359 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 SLC35G6P0C7Q6 338 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 MYOGP15173 224 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 BMP7P18075 431 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 F8A1P23610 371 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 EVI2BP34910 448 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 OR10A3P58181 314 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 E2F1Q01094 437 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 LAMTOR1Q6IAA8 161 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 ARL9Q6T311 187 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 SAMD14Q8IZD0 417 aaPredicted RBP17.86■□□□□ 0.45
VPS28-213ENST00000530983 RNF113BQ8IZP6 322 aaKnown RBP17.86■□□□□ 0.45
VPS28-213ENST00000530983 ZNF619Q8N2I2 560 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 SPERTQ8NA61 448 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 BADQ92934 168 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 SCARF2Q96GP6 870 aaPredicted RBP17.86■□□□□ 0.45
VPS28-213ENST00000530983 CMC2Q9NRP2 79 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 ZMIZ1Q9ULJ6 1067 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 RASD1Q9Y272 281 aa17.86■□□□□ 0.45
VPS28-213ENST00000530983 NPIPA5A0A0B4J1W7 369 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 NPIPA7E9PJI5 369 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 SMLR1H3BR10 107 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 NPIPA8P0DM63 369 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 SMIM10L1P0DMW3 83 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 CPMP14384 443 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 NID1P14543 1247 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 IL9P15248 144 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 FOXK2Q01167 660 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 ID2Q02363 134 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 DCST2Q5T1A1 773 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 FHL5Q5TD97 284 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 SFXN4Q6P4A7 337 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 USP53Q70EK8 1073 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 OAFQ86UD1 273 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 SHISA5Q8N114 240 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 SAMD12Q8N8I0 201 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 OR13C2Q8NGS9 318 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 SMIM10Q96HG1 83 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 TEAD3Q99594 435 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 THAP7Q9BT49 309 aaPredicted RBP17.85■□□□□ 0.45
VPS28-213ENST00000530983 SLC28A3Q9HAS3 691 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 DIABLOQ9NR28 239 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 OBP2AQ9NY56 170 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 DAPP1Q9UN19 280 aa17.85■□□□□ 0.45
VPS28-213ENST00000530983 A0A1B0GVC2 190 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 CDHR4A6H8M9 788 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 A6NIN4 97 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 PLPP2O43688 288 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 OR2B3O76000 313 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 DBIP07108 87 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 MRPL3P09001 348 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 NOS3P29474 1203 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 RFX3P48380 749 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 ATP12AP54707 1039 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 SUZ12Q15022 739 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 GARNL3Q5VVW2 1013 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 ASB18Q6ZVZ8 466 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 C17orf47Q8NEP4 570 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 KCTD12Q96CX2 325 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 TM4SF19Q96DZ7 209 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 ARSGQ96EG1 525 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 OR2A5Q96R48 311 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 SERINC2Q96SA4 455 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 GTPBP2Q9BX10 602 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 TRPV4Q9HBA0 871 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 ADAP2Q9NPF8 381 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 C19orf53Q9UNZ5 99 aaPredicted RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 XIRP2A4UGR9 3374 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 A0A0G2JK05 382 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 PRSS38A1L453 326 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 PRR23D1E9PI22 279 aaPredicted RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 CTSVO60911 334 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 STX11O75558 287 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 MT-ND5P03915 603 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 PRR23D2P0DMB1 279 aaPredicted RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 RBMS1P29558 406 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 TALDO1P37837 337 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 PLA1AQ53H76 456 aa17.84■□□□□ 0.45
VPS28-213ENST00000530983 EXOSC6Q5RKV6 272 aaKnown RBP17.84■□□□□ 0.45
VPS28-213ENST00000530983 FCRLBQ6BAA4 426 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms