RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 KCTD14Q9BQ13 255 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 THUMPD3Q9BV44 507 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 ADNPQ9H2P0 1102 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 REEP4Q9H6H4 257 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 GAREM1Q9H706 876 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SYNDIG1Q9H7V2 258 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RMND5AQ9H871 391 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 DDX31Q9H8H2 851 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 ERVMER34-1Q9H9K5 563 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 UCK1Q9HA47 277 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RNPEPL1Q9HAU8 725 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FAM60AQ9NP50 221 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 MIEF1Q9NQG6 463 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SNTG1Q9NSN8 517 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FAM120CQ9NX05 1096 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 TEX10Q9NXF1 929 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 TMEM9Q9P0T7 183 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ANKMY1Q9P2S6 941 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 LRIT1Q9P2V4 623 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ATP6V1HQ9UI12 483 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 GMEB2Q9UKD1 530 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PILRAQ9UKJ1 303 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FBXO4Q9UKT5 387 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FBXW2Q9UKT8 454 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CLCA2Q9UQC9 943 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ERVK-11Q9UQG0 969 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CAMK2AQ9UQM7 478 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RCE1Q9Y256 329 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CBY1Q9Y3M2 126 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PCDHGA1Q9Y5H4 931 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ENTPD2Q9Y5L3 495 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CSNK1G3Q9Y6M4 447 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 V9GYQ6 96 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PCNX1Q96RV3 2341 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 MED12LQ86YW9 2145 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RP1L1Q8IWN7 2480 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 APC2O95996 2303 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 FREM2Q5SZK8 3169 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TRAV6A0A075B6T7 132 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 IGHV1OR21-1A0A087WYE8 117 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 IGHV5-51A0A0C4DH38 117 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 LY6G6EA0A0G2JKS1 128 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 A0A0U1RQK1 487 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 RNF103-CHMP3A0A140T963 221 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PRSS51A0A1B0GVH4 220 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 A0A1W2PS29 197 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TCRBV3S1A0A5B6 114 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ZNF320A2RRD8 509 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CPED1A4D0V7 1026 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TLCD2A6NGC4 264 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ACOD1A6NK06 481 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 EIF4E1BA6NMX2 242 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 ENO4A6NNW6 628 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 A8MU76 341 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 NDUFS8O00217 210 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 RNASET2O00584 256 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 PEX12O00623 359 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ARPC2O15144 300 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PGRMC2O15173 223 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 B4GAT1O43505 415 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SLC25A17O43808 307 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DUX1O43812 170 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ATP6V1G1O75348 118 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ERN1O75460 977 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 ERAL1O75616 437 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 OR5F1O95221 314 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 AIFM1O95831 613 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PRB1P04280 392 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 FAM58BPP0C7Q3 252 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SLC35G6P0C7Q6 338 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 C8orf89P0DMQ9 161 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PRKAR1AP10644 381 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ALPPL2P10696 532 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ENGP17813 658 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 HIST1H1TP22492 207 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 PRKACBP22694 351 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 GSTM2P28161 218 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 SOAT1P35610 550 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 NUP62P37198 522 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 RPL3P39023 403 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 FAM3BP58499 235 aaPredicted RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 GMFBP60983 142 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 STXBP1P61764 594 aaKnown RBP3.87□□□□□ -1.79
CD44-226ENST00000527889 B2MP61769 119 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 HBA1P69905 142 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 BTN3A2P78410 334 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 KCNJ10P78508 379 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 MC2RQ01718 297 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ID2Q02363 134 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 CFHR1Q03591 330 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TGM3Q08188 693 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 PDE7AQ13946 482 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 KCTD21Q4G0X4 260 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DEFB134Q4QY38 66 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.87□□□□□ -1.79
CD44-226ENST00000527889 NDUFAF5Q5TEU4 345 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ARHGAP40Q5TG30 622 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 ANXA8L1Q5VT79 327 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 C18orf63Q68DL7 685 aa3.87□□□□□ -1.79
CD44-226ENST00000527889 TCEAL6Q6IPX3 200 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms