RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 LRRC46Q96FV0 321 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 GNRHR2Q96P88 292 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 TRNT1Q96Q11 434 aaKnown RBP9.19□□□□□ -0.94
VPS28-204ENST00000526054 CGREF1Q99674 301 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 CPPED1Q9BRF8 314 aaPredicted RBP9.19□□□□□ -0.94
VPS28-204ENST00000526054 GPATCH1Q9BRR8 931 aaKnown RBP9.19□□□□□ -0.94
VPS28-204ENST00000526054 CLEC4MQ9H2X3 399 aaPredicted RBP9.19□□□□□ -0.94
VPS28-204ENST00000526054 UBQLN3Q9H347 655 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 PTGES2Q9H7Z7 377 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 CACYBPQ9HB71 228 aaKnown RBP9.19□□□□□ -0.94
VPS28-204ENST00000526054 ACKR4Q9NPB9 350 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 SLAMF8Q9P0V8 285 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 DKKL1Q9UK85 242 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 DTNAQ9Y4J8 743 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 GMEB1Q9Y692 573 aa9.19□□□□□ -0.94
VPS28-204ENST00000526054 IGLV3-32A0A0A0MS00 114 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 LOC100653049A0A140TA62 436 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 C5orf58C9J3I9 102 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 NPIPB9F8W1W9 429 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 FBP2O00757 339 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 KRT34O76011 436 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 H6PDO95479 791 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 NPPAP01160 153 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 HPNP05981 417 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 BCHEP06276 602 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 BMP2P12643 396 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 CD99P14209 185 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 ACANP16112 2415 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 BMP5P22003 454 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 SRD5A2P31213 254 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 ASCL1P50553 236 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 CRISP3P54108 245 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 MAP1AP78559 2803 aaPredicted RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 CRYZQ08257 329 aaKnown RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 GANABQ14697 944 aaKnown RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 ZNF141Q15928 474 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 SYPL1Q16563 259 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 ACSF3Q4G176 576 aaPredicted RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 RUNDC3AQ59EK9 446 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 PDZK1Q5T2W1 519 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 GCNT6Q5T4J0 391 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 OR5M10Q6IEU7 315 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 TYW3Q6IPR3 259 aaKnown RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 APOOLQ6UXV4 268 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 SEM1Q6ZVN7 128 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 ANKFN1Q8N957 763 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 FADS6Q8N9I5 356 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 GATSQ8NAP1 163 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 RELL2Q8NC24 303 aaPredicted RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 NAXEQ8NCW5 288 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 OR2M3Q8NG83 312 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 PHOSPHO1Q8TCT1 267 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 DUSP19Q8WTR2 217 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 PMM1Q92871 262 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 CMTM5Q96DZ9 223 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 ANKRD27Q96NW4 1050 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 FOXC2Q99958 501 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 SH3GL1Q99961 368 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 CCDC106Q9BWC9 280 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 OR2B2Q9GZK3 357 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 MYLK2Q9H1R3 596 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 DSN1Q9H410 356 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 A4GALTQ9NPC4 353 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 CCM2LQ9NUG4 571 aaPredicted RBP9.18□□□□□ -0.94
VPS28-204ENST00000526054 GID8Q9NWU2 228 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 CRIM1Q9NZV1 1036 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 ST6GALNAC2Q9UJ37 374 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 MKLN1Q9UL63 735 aa9.18□□□□□ -0.94
VPS28-204ENST00000526054 PCNX3Q9H6A9 2034 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PRAMEF27A3QJZ7 478 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 AHRRA9YTQ3 701 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 GTPBP1O00178 669 aaKnown RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 EBAG9O00559 213 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 FCMRO60667 390 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 TNFRSF21O75509 655 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 UGT2B17O75795 530 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 CHRM4P08173 479 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 UBL4AP11441 157 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 COX4I1P13073 169 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 GPX2P18283 190 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 DPP4P27487 766 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PRDX6P30041 224 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 SUMO3P55854 103 aaPredicted RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 DSCR4P56555 118 aaPredicted RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 MTPNP58546 118 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 CHRNEQ04844 493 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 CD226Q15762 336 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 KLHL26Q53HC5 615 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PRAMEF8Q5VWM4 474 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PRAMEF7Q5VXH5 474 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 OLIG3Q7RTU3 272 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 ARPINQ7Z6K5 226 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 LACC1Q8IV20 430 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PEX5LQ8IYB4 626 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 PM20D2Q8IYS1 436 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 METTL25Q8N6Q8 603 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 POU5F2Q8N7G0 328 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 FAM83FQ8NEG4 500 aaPredicted RBP9.17□□□□□ -0.94
VPS28-204ENST00000526054 TNIP2Q8NFZ5 429 aa9.17□□□□□ -0.94
VPS28-204ENST00000526054 OR8J3Q8NGG0 315 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms