RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DEFB127Q9H1M4 99 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 EPB41L4BQ9H329 900 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PRORYQ9H606 182 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TNFRSF12AQ9NP84 129 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 U3KQV3 271 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ACANP16112 2415 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TRGV8A0A0C4DH27 118 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 RGS13O14921 159 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 OIP5O43482 229 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 RSL1D1O76021 490 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 H6PDO95479 791 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 WDPCPO95876 746 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ATP6V1B2P21281 511 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 GNLYP22749 145 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SOX6P35712 828 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 AGFG1P52594 562 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PLGLB1Q02325 96 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SSPNQ14714 243 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 VWA5B1Q5TIE3 1220 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 HLA-DQA1Q5Y7H0 255 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 RAB12Q6IQ22 244 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 LIN54Q6MZP7 749 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM81Q6P7N7 255 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ADGRD1Q6QNK2 874 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 FAM111BQ6SJ93 734 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PLXDC2Q6UX71 529 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM108Q6UXF1 575 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ANKRD46Q86W74 232 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 LRRC56Q8IYG6 542 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 BEST3Q8N1M1 668 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 CELF2-AS1Q8N7Q2 184 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 OR4K1Q8NGD4 311 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SUN3Q8TAQ9 357 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 CPT1CQ8TCG5 803 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 WDR12Q9GZL7 423 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SAR1AQ9NR31 198 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 MRPS33Q9Y291 106 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TESMINQ9Y4I5 508 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TRBC2A0A5B9 178 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 H3BMQ9 156 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PSMD9O00233 223 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 AIM2O14862 343 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TMPRSS11DO60235 418 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 FGF17O60258 216 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 GALR3O60755 368 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 AKR7A3O95154 331 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 C1QAP02745 245 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 IL6P05231 212 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 CCR9P51686 369 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SKP1P63208 163 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 RHDQ02161 417 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 C2orf80Q0P641 193 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 OCLNQ16625 522 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZBED5Q49AG3 693 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF468Q5VIY5 522 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 LIPNQ5VXI9 398 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 BICRALQ6AI39 1079 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZYG11AQ6WRX3 759 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF551Q7Z340 670 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 WDSUB1Q8N9V3 476 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 MFSD9Q8NBP5 474 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ATP6V1C2Q8NEY4 427 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZFP90Q8TF47 636 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 APIPQ96GX9 242 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 RHOVQ96L33 236 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 FRMD6Q96NE9 622 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 KCTD14Q9BQ13 255 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 EFCAB11Q9BUY7 163 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 GATA5Q9BWX5 397 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SLA2Q9H6Q3 261 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 GORASP2Q9H8Y8 452 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ARID1AO14497 2285 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 JMJD1CQ15652 2540 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 A0A0X1KG70 313 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 C21orf140B9A014 251 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 E9PI62 339 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 PLPP1O14494 284 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR2J2O76002 312 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 SLITRK5O94991 958 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CLIC3O95833 236 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ANXA4P09525 319 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 EPORP19235 508 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ATP5F1P24539 256 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 TLX1P31314 330 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CCR4P51679 360 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 RRADP55042 308 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 TGM3Q08188 693 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 DGCR6Q14129 220 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 KLHL12Q53G59 568 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 UNC50Q53HI1 259 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 ARL13AQ5H913 290 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 FAM76BQ5HYJ3 339 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 KLHL17Q6TDP4 642 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 CPEB2Q7Z5Q1 589 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 LACC1Q8IV20 430 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR5M9Q8NGP3 310 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 OR5AK3PQ8NH89 298 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 APOPT1Q96IL0 206 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 DGAT2Q96PD7 388 aa7.3□□□□□ -1.24
LIMCH1-219ENST00000514096 FYTTD1Q96QD9 318 aaKnown RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms