RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TMCC3Q9ULS5 477 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 IFT52Q9Y366 437 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 COL5A1P20908 1838 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-230ENST00000488543 CNOT1A5YKK6 2376 aaKnown RBP11.24□□□□□ -0.61
HDAC6-230ENST00000488543 NPIPA5A0A0B4J1W7 369 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 PMS2P1A4D2B8 440 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 NPIPA7E9PJI5 369 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 CYP7B1O75881 506 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 AK1P00568 194 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 NPIPA8P0DM63 369 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 GABRB1P18505 474 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 GALNSP34059 522 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 TRHRP34981 398 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-230ENST00000488543 FUT7Q11130 342 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 PTGES3Q15185 160 aaKnown RBP11.24□□□□□ -0.61
HDAC6-230ENST00000488543 NPSR1Q6W5P4 371 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 MEX3DQ86XN8 651 aaKnown RBP11.24□□□□□ -0.61
HDAC6-230ENST00000488543 SLC7A5P1Q8MH63 180 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 CYP4Z2PQ8N1L4 340 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 PARP16Q8N5Y8 322 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 MORN4Q8NDC4 146 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 DIO2Q92813 273 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 PHOX2BQ99453 314 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 FNDC11Q9BVV2 318 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 MARCH7Q9H992 704 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF304Q9HCX3 659 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 CTPS2Q9NRF8 586 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 REV1Q9UBZ9 1251 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 RARRES3Q9UL19 164 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 NTNG1Q9Y2I2 539 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 MMACHCQ9Y4U1 282 aa11.24□□□□□ -0.61
HDAC6-230ENST00000488543 IGKV3D-11A0A0A0MRZ8 115 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 PEX12O00623 359 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 BRINP1O60477 761 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 SCRG1O75711 98 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ADAP00813 363 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 IGKV1D-16P01601 117 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CD53P19397 219 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 NR4A2P43354 598 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 LSM11P83369 360 aaKnown RBP eCLIP11.23□□□□□ -0.612e-7■■■■□ 20.9
HDAC6-230ENST00000488543 HOXC5Q00444 222 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 PLAURQ03405 335 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 DSG2Q14126 1118 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 SERTAD2Q14140 314 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 TBCEQ15813 527 aaPredicted RBP11.23□□□□□ -0.61
HDAC6-230ENST00000488543 MFSD4BQ5TF39 518 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CELF2-AS1Q8N7Q2 184 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF615Q8N8J6 731 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 BMPERQ8N8U9 685 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 OR1F2PQ96R84 312 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 TRIM45Q9H8W5 580 aaPredicted RBP11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF556Q9HAH1 456 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 TOR4AQ9NXH8 423 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 DNAJC27Q9NZQ0 273 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 MGAT4BQ9UQ53 548 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ERVK-19Q9WJR5 959 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 LINC00854A0A1B0GVQ3 168 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 A0A1B0GX78 115 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 SMIM30A4D0T7 59 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 WWP2O00308 870 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CTDSP2O14595 271 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF28P17035 718 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 SOX3P41225 446 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF136P52737 540 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 KCNJ8Q15842 424 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 MINDY4Q4G0A6 757 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ZNF362Q5T0B9 420 aaPredicted RBP11.23□□□□□ -0.61
HDAC6-230ENST00000488543 DESI1Q6ICB0 168 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 LCN10Q6JVE6 187 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 PPP1R3BQ86XI6 285 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 OR4N2Q8NGD1 307 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 TSLPQ969D9 159 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 MYDGFQ969H8 173 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CLIP3Q96DZ5 547 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 BCL7BQ9BQE9 202 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 MESP1Q9BRJ9 268 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CNPPD1Q9BV87 410 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 RERGLQ9H628 205 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 POLE3Q9NRF9 147 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 ERVK13-1Q9NX77 482 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CTSFQ9UBX1 484 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 CLEC2DQ9UHP7 191 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 SLC13A4Q9UKG4 626 aa11.23□□□□□ -0.61
HDAC6-230ENST00000488543 LRRTM2O43300 516 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 NTN1O95631 604 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 THY1P04216 161 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 TP53P04637 393 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 DBIP07108 87 aaKnown RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 GUSBP08236 651 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 GSTT2P0CG29 244 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 GSTT2BP0CG30 244 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 FBLP22087 321 aaKnown RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 RGS6P49758 472 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 RGS8P57771 180 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 INSM1Q01101 510 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 RHAGQ02094 409 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 LARS2Q15031 903 aaKnown RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 ARHGAP40Q5TG30 622 aa11.22□□□□□ -0.61
HDAC6-230ENST00000488543 YOD1Q5VVQ6 348 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-230ENST00000488543 RHBDD2Q6NTF9 364 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms