RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 TRIM2Q9C040 744 aa16.06■□□□□ 0.16
UPF3A-206ENST00000480362 POLR2J2Q9GZM3 115 aaKnown RBP16.06■□□□□ 0.16
UPF3A-206ENST00000480362 POLR2J3Q9H1A7 115 aaKnown RBP16.06■□□□□ 0.16
UPF3A-206ENST00000480362 TMEM27Q9HBJ8 222 aa16.06■□□□□ 0.16
UPF3A-206ENST00000480362 SH2D2AQ9NP31 389 aa16.06■□□□□ 0.16
UPF3A-206ENST00000480362 SDHAF3Q9NRP4 125 aa16.06■□□□□ 0.16
UPF3A-206ENST00000480362 GPR83Q9NYM4 423 aa16.06■□□□□ 0.16
UPF3A-206ENST00000480362 CNOT11Q9UKZ1 510 aaKnown RBP16.06■□□□□ 0.16
UPF3A-206ENST00000480362 MAGED1Q9Y5V3 778 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-206ENST00000480362 TRAPPC13A5PLN9 417 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 GMFGO60234 142 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 OR5F1O95221 314 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 F10P00742 488 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 CD96P40200 585 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 VHLP40337 213 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 P2RX1P51575 399 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ARHGDIAP52565 204 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ST3GAL3Q11203 375 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 SNTA1Q13424 505 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 LAPTM4AQ15012 233 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 EXOC3L2Q2M3D2 409 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 OR5M10Q6IEU7 315 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 SLC30A6Q6NXT4 461 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 SHQ1Q6PI26 577 aaKnown RBP16.05■□□□□ 0.16
UPF3A-206ENST00000480362 TBPL2Q6SJ96 375 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ISLR2Q6UXK2 745 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ZBTB49Q6ZSB9 765 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 GDF7Q7Z4P5 450 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 MDGA2Q7Z553 956 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 STK32CQ86UX6 486 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 HIPK1Q86Z02 1210 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ZDHHC13Q8IUH4 622 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 EPHX4Q8IUS5 362 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 OFCC1Q8IZS5 231 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 HS3ST5Q8IZT8 346 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 CATSPER1Q8NEC5 780 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 B4GALNT2Q8NHY0 566 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 SLC41A3Q96GZ6 507 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 DCBLD2Q96PD2 775 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ALPK1Q96QP1 1244 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 SLC29A1Q99808 456 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 UTP23Q9BRU9 249 aaKnown RBP16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ANGPTL4Q9BY76 406 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 KLHL4Q9C0H6 718 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ZNF552Q9H707 407 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-206ENST00000480362 CNIH4Q9P003 139 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 PPP4R1LQ9P1A2 415 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 ICAM5Q9UMF0 924 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 KCNMB2Q9Y691 235 aa16.05■□□□□ 0.16
UPF3A-206ENST00000480362 RRP8O43159 456 aaKnown RBP16.04■□□□□ 0.16
UPF3A-206ENST00000480362 PEX1O43933 1283 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 WDPCPO95876 746 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 THY1P04216 161 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 PRKACGP22612 351 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 ITPKBP27987 946 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 CASRP41180 1078 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 SLC6A8P48029 635 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 LIMS1P48059 325 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 IDH2P48735 452 aaKnown RBP16.04■□□□□ 0.16
UPF3A-206ENST00000480362 COPZ1P61923 177 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 TUBA3CQ13748 450 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 TRAM2Q15035 370 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 COL28A1Q2UY09 1125 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 FGD3Q5JSP0 725 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 OTUD3Q5T2D3 398 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-206ENST00000480362 TUBA3EQ6PEY2 450 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 ZNF227Q86WZ6 799 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 APLFQ8IW19 511 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-206ENST00000480362 CADM2Q8N3J6 435 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 CBR4Q8N4T8 237 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 LSMEM1Q8N8F7 131 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 TOR1AIP2Q8NFQ8 470 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 OR5W2Q8NH69 310 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 SDCCAG3Q96C92 435 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 NRBF2Q96F24 287 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 KLHDC3Q9BQ90 382 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 VCX3BQ9H321 246 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 CPNE5Q9HCH3 593 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 MAN2C1Q9NTJ4 1040 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 PLA2G3Q9NZ20 509 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 PDP1Q9P0J1 537 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-206ENST00000480362 LRFN1Q9P244 771 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 RPS6KB2Q9UBS0 482 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 TMCC3Q9ULS5 477 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 SLC7A7Q9UM01 511 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 WIF1Q9Y5W5 379 aa16.04■□□□□ 0.16
UPF3A-206ENST00000480362 TRBV4-1A0A0J9YWV2 114 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 A0A1B0GWA3 101 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 A0A1W2PRQ8 180 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 ANKRD33BA6NCL7 494 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 SOCS2O14508 198 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 P04436 131 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 THRBP10828 461 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 UQCRBP14927 111 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 ZNF26P17031 533 aaPredicted RBP16.03■□□□□ 0.16
UPF3A-206ENST00000480362 ELAVL4P26378 380 aaKnown RBP16.03■□□□□ 0.16
UPF3A-206ENST00000480362 MFAP5Q13361 173 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 CBFBQ13951 182 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 DGCR6Q14129 220 aa16.03■□□□□ 0.16
UPF3A-206ENST00000480362 GK3PQ14409 553 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms