RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 H3BMQ9 156 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 RS1O15537 224 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 UGT2B17O75795 530 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 GJB5O95377 273 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 NDUFB10O96000 172 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 PGK1P00558 417 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 GCFC2P16383 781 aaKnown RBP4.05□□□□□ -1.76
UPF3B-203ENST00000478840 NCF2P19878 526 aaPredicted RBP4.05□□□□□ -1.76
UPF3B-203ENST00000478840 MAGEA8P43361 318 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 SEC61GP60059 68 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 KLRC3Q07444 240 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 BST1Q10588 318 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 ST3GAL3Q11203 375 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 CUL2Q13617 745 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 KCNJ11Q14654 390 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 SSX2Q16385 188 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 DPYSL2Q16555 572 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 CTSL3PQ5NE16 218 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 LEMD1Q68G75 181 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 METTL7BQ6UX53 244 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 CCDC50Q8IVM0 306 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 SLC22A18ASQ8N1D0 253 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 NECAB1Q8N987 351 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 ZNF671Q8TAW3 534 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 ITLN1Q8WWA0 313 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 RBM14Q96PK6 669 aaKnown RBP4.05□□□□□ -1.76
UPF3B-203ENST00000478840 MTMR9Q96QG7 549 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 RBM4BQ9BQ04 359 aaKnown RBP4.05□□□□□ -1.76
UPF3B-203ENST00000478840 ZNF670Q9BS34 389 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 SPATA16Q9BXB7 569 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 TIGARQ9NQ88 270 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 NUDT15Q9NV35 164 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 ETNK2Q9NVF9 386 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 SEC14L3Q9UDX4 400 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 ZNF639Q9UID6 485 aa4.05□□□□□ -1.76
UPF3B-203ENST00000478840 B4DXG7 233 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 G3V3Y1 287 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 KBTBD11O94819 623 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 HOXD4P09016 255 aaPredicted RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 UQCRFS1P1P0C7P4 283 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 LAMP1P11279 417 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 TOP1P11387 765 aaKnown RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ACADSP16219 412 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 SERPINA2P20848 420 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 NMT1P30419 496 aaKnown RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ELK3P41970 407 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 TDO2P48775 406 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 HNRNPA3P51991 378 aaKnown RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 EFNA3P52797 238 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 SUCLG1P53597 346 aaKnown RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 LIM2P55344 173 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ERVPABLB-1P60509 514 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 TP53I3Q53FA7 332 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 C1orf220Q5T0J3 134 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ZNF343Q6P1L6 599 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 PAQR6Q6TCH4 344 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ZNF600Q6ZNG1 722 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 TIPARPQ7Z3E1 657 aaKnown RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 SLC47A2Q86VL8 602 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 TPRA1Q86W33 373 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 UBE2J2Q8N2K1 259 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 KIR3DL3Q8N743 410 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 CSNK1A1LQ8N752 337 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 OR2T33Q8NG76 320 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 OR9K2Q8NGE7 335 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 OR6T1Q8NGN1 323 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 SLC2A14Q8TDB8 520 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ARNTL2Q8WYA1 636 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 EFHD2Q96C19 240 aaPredicted RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 RASD2Q96D21 266 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ZBED6CLQ96FA7 236 aaPredicted RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 CCNL2Q96S94 520 aaPredicted RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 SLC35A5Q9BS91 424 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ROPN1BQ9BZX4 212 aaPredicted RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 RHBGQ9H310 441 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 PNO1Q9NRX1 252 aaKnown RBP4.04□□□□□ -1.76
UPF3B-203ENST00000478840 PRODH2Q9UF12 536 aa4.04□□□□□ -1.76
UPF3B-203ENST00000478840 ARHGEF35A5YM69 484 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 GOLGA8OA6NCC3 632 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 GOLGA8NF8WBI6 632 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 K7ENP7 123 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 FOXE1O00358 373 aaPredicted RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 LRRTM2O43300 516 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 MED7O43513 233 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 ERLIN1O75477 346 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 CIB2O75838 187 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 VENTXO95231 258 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 SLC2A10O95528 541 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 NCK1P16333 377 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 DUSP3P51452 185 aaPredicted RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 CRYBB1P53674 252 aaPredicted RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 OC90Q02509 493 aaPredicted RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 KLRB1Q12918 225 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 C6orf226Q5I0X4 101 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 PDZK1Q5T2W1 519 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 PRAMEF5Q5TYX0 476 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 PRAMEF6Q5VXH4 476 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 UFSP1Q6NVU6 142 aa4.03□□□□□ -1.76
UPF3B-203ENST00000478840 FAM199XQ6PEV8 388 aaPredicted RBP4.03□□□□□ -1.76
UPF3B-203ENST00000478840 SERINC5Q86VE9 423 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms