RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 PRAMEF20Q5VT98 475 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 AP1ARQ63HQ0 302 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 B3GNTL1Q67FW5 361 aaPredicted RBP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 WBP2NLQ6ICG8 309 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 HMBOX1Q6NT76 420 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 H3F3CQ6NXT2 135 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF613Q6PF04 617 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 ULK3Q6PHR2 472 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 SHQ1Q6PI26 577 aaKnown RBP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 IZUMO2Q6UXV1 221 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF730Q6ZMV8 503 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 LINC00696Q6ZRV3 163 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 LILRA2Q8N149 483 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 GALNT4Q8N4A0 578 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 ELOA3Q8NG57 546 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 MAGEE2Q8TD90 523 aaPredicted RBP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 DNAJA4Q8WW22 397 aaPredicted RBP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 DNAJC9Q8WXX5 260 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 HGDQ93099 445 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF597Q96LX8 424 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 JSRP1Q96MG2 331 aaPredicted RBP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 C5orf34Q96MH7 638 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 ALPK1Q96QP1 1244 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 NODALQ96S42 347 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 NMNAT1Q9HAN9 279 aaPredicted RBP9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 FLRT3Q9NZU0 649 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 LRFN1Q9P244 771 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 B4GALT7Q9UBV7 327 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 KCNE5Q9UJ90 142 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 SLC7A7Q9UM01 511 aa9.41□□□□□ -0.9
PRPF38A-202ENST00000474048 A0A1W2PRQ8 180 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 TMEM200CA6NKL6 621 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 MASP2O00187 686 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 EI24O14681 340 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 EFSO43281 561 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 CHP2O43745 196 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 PEX1O43933 1283 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 FADS1O60427 444 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 SNX4O95219 450 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 HPRP00739 348 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ADRB1P08588 477 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 PNMTP11086 282 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ANXA8P13928 327 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 CD46P15529 392 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 IGFBP5P24593 272 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 HTR3AP46098 478 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 IDH2P48735 452 aaKnown RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF117Q03924 483 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 SKP2Q13309 424 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 DGCR6Q14129 220 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 TOMM20Q15388 145 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 CD226Q15762 336 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 EXOC3L2Q2M3D2 409 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 COL28A1Q2UY09 1125 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 NDUFAF6Q330K2 333 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 RFX4Q33E94 735 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF791Q3KP31 576 aaPredicted RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 SWT1Q5T5J6 900 aaKnown RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 TTC33Q6PID6 262 aaPredicted RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 RBM45Q8IUH3 476 aaKnown RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 LACC1Q8IV20 430 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ARMC10Q8N2F6 343 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 CBR4Q8N4T8 237 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 FAM98AQ8NCA5 519 aaKnown RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ZNF555Q8NEP9 628 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 OR10G2Q8NGC3 310 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 OR1J4Q8NGS1 313 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 OR5W2Q8NH69 310 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 PIGXQ8TBF5 258 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 DUSP19Q8WTR2 217 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 MPP4Q96JB8 637 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 HS6ST2Q96MM7 605 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 NDEL1Q9GZM8 345 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 KRT84Q9NSB2 600 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ANKRD10Q9NXR5 420 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 TAS2R10Q9NYW0 307 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 DKKL1Q9UK85 242 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 PRDM4Q9UKN5 801 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 BOKQ9UMX3 212 aaPredicted RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 LYVE1Q9Y5Y7 322 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 SPIN1Q9Y657 262 aaPredicted RBP9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 AHCTF1Q8WYP5 2266 aa9.4□□□□□ -0.9
PRPF38A-202ENST00000474048 ANKUB1A6NFN9 424 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 PDLIM1O00151 329 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 CDC40O60508 579 aaKnown RBP eCLIP9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 RASAL1O95294 804 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 CXCR1P25024 350 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 ELAVL4P26378 380 aaKnown RBP9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 GCKP35557 465 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 CASP3P42574 277 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 ALDH3A2P51648 485 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 TMPRSS3P57727 454 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 PPP1R8Q12972 351 aaKnown RBP9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 MFAP5Q13361 173 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 DAG1Q14118 895 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 MICAQ29983 383 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 WLSQ5T9L3 541 aa9.39□□□□□ -0.91
PRPF38A-202ENST00000474048 TMEM81Q6P7N7 255 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms