RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 HSPBAP1Q96EW2 488 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 SLC38A2Q96QD8 506 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 PHOX2BQ99453 314 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 ERGIC3Q9Y282 383 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 CORINQ9Y5Q5 1042 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 PMF1-BGLAPU3KQ54 211 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 TCRBV16S1A1N1A0A5B0 115 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 STAT5AP42229 794 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 FGFBP1Q14512 234 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 TSTQ16762 297 aaKnown RBP16.84■□□□□ 0.29
COL9A3-205ENST00000466192 TMEM163Q8TC26 289 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 OSTF1Q92882 214 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 ZNF559Q9BR84 538 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 OR8D2Q9GZM6 311 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 DCSTAMPQ9H295 470 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 FAIMQ9NVQ4 179 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 IL20Q9NYY1 176 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 CLCA3PQ9Y6N3 262 aa16.84■□□□□ 0.29
COL9A3-205ENST00000466192 KPNA4O00629 521 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-205ENST00000466192 DDAH2O95865 285 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 ANKRD34CP0C6C1 535 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 ACAA2P42765 397 aaKnown RBP16.83■□□□□ 0.28
COL9A3-205ENST00000466192 ATP12AP54707 1039 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 ZNF620Q6ZNG0 422 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 MRGPREQ86SM8 312 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 TMEM105Q8N8V8 129 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 OR4C3Q8NH37 302 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 PFN4Q8NHR9 129 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 CHCHD6Q9BRQ6 235 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 RNF167Q9H6Y7 350 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-205ENST00000466192 FLRT3Q9NZU0 649 aa16.83■□□□□ 0.28
COL9A3-205ENST00000466192 ZNF223Q9UK11 482 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-205ENST00000466192 IGHV5-10-1A0A0J9YXX1 117 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 TMEM221A6NGB7 291 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 MAGEB3O15480 346 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 APOL3O95236 402 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 IGKV3-11P04433 115 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SERPINB10P48595 397 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 CD97P48960 835 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 CBX3Q13185 183 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 PAQR6Q6TCH4 344 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 OR4D9Q8NGE8 314 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 OR4Q3Q8NH05 313 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SLC2A12Q8TD20 617 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 ZNF721Q8TF20 911 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 TMEM239Q8WW34 195 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SH3YL1Q96HL8 342 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 DPH1Q9BZG8 443 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 LRRN3Q9H3W5 708 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SYNDIG1Q9H7V2 258 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 KRCC1Q9NPI7 259 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SLC22A11Q9NSA0 550 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 C20orf141Q9NUB4 165 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 C14orf105Q9NVL8 296 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 CTSFQ9UBX1 484 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 ARHGAP33O14559 1287 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 YKT6O15498 198 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 CSO75390 466 aaKnown RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 FUT1P19526 365 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 RAB15P59190 212 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 ELAVL1Q15717 326 aaKnown RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 NSDHLQ15738 373 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 ZNF613Q6PF04 617 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 C16orf87Q6PH81 154 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 COX15Q7KZN9 410 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SLC38A9Q8NBW4 561 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 ANKK1Q8NFD2 765 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 OR52I1Q8NGK6 324 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 GRHL3Q8TE85 626 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 EFHD2Q96C19 240 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 PLEKHA8Q96JA3 519 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SLC46A1Q96NT5 459 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 OR6C1Q96RD1 312 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 CENPOQ9BU64 300 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 VN1R1Q9GZP7 353 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 SLIRPQ9GZT3 109 aaKnown RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 EVA1AQ9H8M9 152 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 TMEM27Q9HBJ8 222 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 ATP13A2Q9NQ11 1180 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 OSGIN1Q9UJX0 560 aa16.82■□□□□ 0.28
COL9A3-205ENST00000466192 LSM2Q9Y333 95 aaKnown RBP16.82■□□□□ 0.28
COL9A3-205ENST00000466192 A0A0B4J2E0 115 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 A0A1B0GX12 115 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 TIAF1O95411 115 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 SOX3P41225 446 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 SPHARQ15513 63 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 RHBDD2Q6NTF9 364 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 Q6ZNX1 250 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 SNRNP27Q8WVK2 155 aaKnown RBP16.81■□□□□ 0.28
COL9A3-205ENST00000466192 SAMD8Q96LT4 415 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 OPALINQ96PE5 141 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 MND1Q9BWT6 205 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 PRRG3Q9BZD7 231 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 NXF5Q9H1B4 397 aaKnown RBP16.81■□□□□ 0.28
COL9A3-205ENST00000466192 MKKSQ9NPJ1 570 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-205ENST00000466192 MKL2Q9ULH7 1088 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 A0A1B0GWA3 101 aa16.81■□□□□ 0.28
COL9A3-205ENST00000466192 CCRL2O00421 344 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms