RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 KIAA0513O60268 411 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 SHOX2O60902 331 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-205ENST00000465238 NPPAP01160 153 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 COX4I1P13073 169 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 CHRNEQ04844 493 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 ZNF141Q15928 474 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 TRMT5Q32P41 509 aaKnown RBP16.05■□□□□ 0.16
COL7A1-205ENST00000465238 PDZK1Q5T2W1 519 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 FRRS1Q6ZNA5 592 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 POU5F2Q8N7G0 328 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 FADS6Q8N9I5 356 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 OR2M3Q8NG83 312 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 OR14L1PQ8NHC6 308 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 CPPED1Q9BRF8 314 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-205ENST00000465238 SAP130Q9H0E3 1048 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 MYLK2Q9H1R3 596 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 MTHFD2LQ9H903 347 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-205ENST00000465238 GID8Q9NWU2 228 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 DKKL1Q9UK85 242 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 L3MBTL1Q9Y468 752 aa16.05■□□□□ 0.16
COL7A1-205ENST00000465238 IGLV3-32A0A0A0MS00 114 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 HSPB2A8KAH6 182 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 C17orf51A8MQB3 221 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 C5orf58C9J3I9 102 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 TNFRSF21O75509 655 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 UGT2B17O75795 530 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 DCTN3O75935 186 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 BCHEP06276 602 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 CHRM4P08173 479 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 NUDT7P0C024 238 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 TFPTP0C1Z6 253 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 BMP2P12643 396 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 GPX2P18283 190 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 DPP4P27487 766 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 SRD5A2P31213 254 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 GCKP35557 465 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 CRISP3P54108 245 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 DLX5P56178 289 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 DSCR4P56555 118 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-205ENST00000465238 CAPRIN1Q14444 709 aaKnown RBP16.04■□□□□ 0.16
COL7A1-205ENST00000465238 HSPB2Q16082 182 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 EIPR1Q53HC9 387 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 WIPI1Q5MNZ9 446 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-205ENST00000465238 GCNT6Q5T4J0 391 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 AP1ARQ63HQ0 302 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 YRDCQ86U90 279 aaKnown RBP16.04■□□□□ 0.16
COL7A1-205ENST00000465238 FAM83FQ8NEG4 500 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-205ENST00000465238 SLC38A5Q8WUX1 472 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 OIT3Q8WWZ8 545 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 PMM1Q92871 262 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 LRRC58Q96CX6 371 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 SH3GL1Q99961 368 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 SLC38A1Q9H2H9 487 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 A4GALTQ9NPC4 353 aa16.04■□□□□ 0.16
COL7A1-205ENST00000465238 AKAP6Q13023 2319 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 C15orf38-AP3S2A0A0A6YYH1 394 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 SERINC4A6NH21 518 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 AHRRA9YTQ3 701 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 HCRTR2O43614 444 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 GMFGO60234 142 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 PEX19P40855 299 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 RNF144AP50876 292 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-205ENST00000465238 MTPNP58546 118 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 CD226Q15762 336 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 ARSKQ6UWY0 536 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 TREML1Q86YW5 311 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 B4GALNT2Q8NHY0 566 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 RCN3Q96D15 328 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 CMTM5Q96DZ9 223 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 TMEM19Q96HH6 336 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 SH3YL1Q96HL8 342 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-205ENST00000465238 LRRC37BQ96QE4 947 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 OR2B2Q9GZK3 357 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 IKZF5Q9H5V7 419 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 TAS2R10Q9NYW0 307 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 KCNE5Q9UJ90 142 aa16.03■□□□□ 0.16
COL7A1-205ENST00000465238 MRPS18CQ9Y3D5 142 aaKnown RBP16.03■□□□□ 0.16
COL7A1-205ENST00000465238 A0A0G2JPF8 293 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 HNRNPCL2B2RXH8 293 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 HNRNPCL3B7ZW38 293 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 AIM2O14862 343 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 EIF4E2O60573 245 aaKnown RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 HNRNPCL1O60812 293 aaKnown RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 EPPINO95925 133 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 HNRNPCL4P0DMR1 293 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 HK1P19367 917 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 CRYZQ08257 329 aaKnown RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 GANABQ14697 944 aaKnown RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 SF3B4Q15427 424 aaKnown RBP eCLIP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 MAPK11Q15759 364 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 MAPK14Q16539 360 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 NANOGP8Q6NSW7 305 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 SEM1Q6ZVN7 128 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 EIF3MQ7L2H7 374 aaKnown RBP16.02■□□□□ 0.16
COL7A1-205ENST00000465238 PEX5LQ8IYB4 626 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 PM20D2Q8IYS1 436 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 METTL25Q8N6Q8 603 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 ANKS4BQ8N8V4 417 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 MAL2Q969L2 176 aa16.02■□□□□ 0.16
COL7A1-205ENST00000465238 ZG16BQ96DA0 208 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms