RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PDK2Q15119 407 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 OR1C1Q15619 314 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SLC1A5Q15758 541 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 C3AR1Q16581 482 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ZNF74Q16587 644 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CCL15Q16663 113 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 DCAF4L1Q3SXM0 396 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CCDC14Q49A88 953 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 NADK2Q4G0N4 442 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 WDR38Q5JTN6 314 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 FAM182AQ5T1J6 154 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 HHATQ5VTY9 493 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 LIPKQ5VXJ0 399 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 PLPP4Q5VZY2 271 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 LIPJQ5W064 366 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ARHGAP17Q68EM7 881 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CGB2Q6NT52 195 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 PMF1Q6P1K2 205 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 LCLAT1Q6UWP7 414 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CES3Q6UWW8 571 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ECHDC2Q86YB7 292 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CENPLQ8N0S6 344 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 PDIK1LQ8N165 341 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CIARTQ8N365 385 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 KIF2BQ8N4N8 673 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 MARVELD2Q8N4S9 558 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 C12orf29Q8N999 325 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 OR10T2Q8NGX3 314 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 GPR148Q8TDV2 347 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 GIPC3Q8TF64 312 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CHPT1Q8WUD6 406 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 FAM172AQ8WUF8 416 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 TMEM37Q8WXS4 190 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 CASP10Q92851 521 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 PIWIL1Q96J94 861 aaKnown RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 C10orf90Q96M02 699 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 DEFB118Q96PH6 123 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 RNF157Q96PX1 679 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 TSPAN18Q96SJ8 248 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 KLF6Q99612 283 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 PIGQQ9BRB3 760 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SNRNP25Q9BV90 132 aaKnown RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 GCOM2Q9BZD3 368 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 CXCL16Q9H2A7 254 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SENP1Q9P0U3 644 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 TAAR2Q9P1P5 351 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 PAK5Q9P286 719 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 ZNF624Q9P2J8 865 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 PSMC3IPQ9P2W1 217 aaPredicted RBP3.59□□□□□ -1.83
VPS29-202ENST00000447578 TUBGCP4Q9UGJ1 667 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 BCAP29Q9UHQ4 241 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 BAIAP2L1Q9UHR4 511 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 KIAA1257Q9ULG3 409 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 PLCL2Q9UPR0 1127 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 HES2Q9Y543 173 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 HEY1Q9Y5J3 304 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 SELENOKQ9Y6D0 94 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 MYH11P35749 1972 aa3.59□□□□□ -1.83
VPS29-202ENST00000447578 BRCA1P38398 1863 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 LCTP09848 1927 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 A0A087WZ39 114 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 IQANK1A0A1B0GTG1 560 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TCRBV9S1A1TA0A576 114 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 BCLAF3A2AJT9 711 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 SRRM4A7MD48 611 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 A8MXQ7 604 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 E7ESA3 106 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 CCSO14618 274 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TLX2O43763 284 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 LANCL1O43813 399 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TYROBPO43914 113 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 EDF1O60869 148 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 ATP6V1G2O95670 118 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 APBB3O95704 486 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 EML2O95834 649 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TBX6O95947 436 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 KRT8P05787 483 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 LYNP07948 512 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SMIM10L2AP0DMW4 78 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SMIM10L2BP0DMW5 78 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 NEFHP12036 1026 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 CCDC130P13994 396 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 HNRNPA2B1P22626 353 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 IL4RP24394 825 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 FCGR2BP31994 310 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 FEN1P39748 380 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 DCTP40126 519 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SULT1E1P49888 294 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 GBX2P52951 348 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 SLC18A1P54219 525 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ACTR1AP61163 376 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 FUT7Q11130 342 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 BNIP1Q12981 228 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SNTB2Q13425 540 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 KCNJ11Q14654 390 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 P2RY6Q15077 328 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 PDK4Q16654 411 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 CLPPQ16740 277 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 ADPRMQ3LIE5 342 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 BOLA3Q53S33 107 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms