RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 ZNF767PQ75MW2 155 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 GLRX5Q86SX6 157 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 GDPD1Q8N9F7 314 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 PEX11GQ96HA9 241 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 AHCYL2Q96HN2 611 aaKnown RBP13.15□□□□□ -0.31
LIMD1-202ENST00000440097 NELL2Q99435 816 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 HDHD5Q9BXW7 423 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 NIPAL2Q9H841 368 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 HSPB11Q9Y547 144 aa13.15□□□□□ -0.31
LIMD1-202ENST00000440097 A0A1W2PRQ8 180 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 SMIM30A4D0T7 59 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PLD2O14939 933 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 SEC14L5O43304 696 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PTNP21246 168 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 CSTF2P33240 577 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIMD1-202ENST00000440097 STARD6P59095 220 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ERV3-1Q14264 604 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ZNF628Q5EBL2 1059 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PRAMEF8Q5VWM4 474 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PRAMEF7Q5VXH5 474 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 CASP12Q6UXS9 341 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 SLC25A46Q96AG3 418 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 RERGLQ9H628 205 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 UCKL1Q9NWZ5 548 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 FTSJ1Q9UET6 329 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 SSR3Q9UNL2 185 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 CACNA1IQ9P0X4 2223 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 SHOXO15266 292 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ATP1B1P05026 303 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ACP2P11117 423 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PSKH1P11801 424 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 AP2S1P53680 142 aaPredicted RBP13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ALDH6A1Q02252 535 aaKnown RBP13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PUS10Q3MIT2 529 aaKnown RBP13.14□□□□□ -0.31
LIMD1-202ENST00000440097 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.14□□□□□ -0.31
LIMD1-202ENST00000440097 LIPKQ5VXJ0 399 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 FIGNL1Q6PIW4 674 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 FRRS1Q6ZNA5 592 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 IDO2Q6ZQW0 420 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 PLEKHM3Q6ZWE6 761 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 CREB3L2Q70SY1 520 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 SPEM1Q8N4L4 309 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ZNF614Q8N883 585 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 OMA1Q96E52 524 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 TCTN2Q96GX1 697 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 GUCD1Q96NT3 240 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 DIABLOQ9NR28 239 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ACAD8Q9UKU7 415 aa13.14□□□□□ -0.31
LIMD1-202ENST00000440097 C19orf53Q9UNZ5 99 aaPredicted RBP13.14□□□□□ -0.31
LIMD1-202ENST00000440097 ZAR1LA6NP61 321 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 CDK2AP1O14519 115 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 ZIC2O95409 532 aaPredicted RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 BCKDHBP21953 392 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 RAB38P57729 211 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 SKP1P63208 163 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 ZNF155Q12901 538 aaPredicted RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 NDUFA9Q16795 377 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 LCN1P1Q5VSP4 162 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 ZNF730Q6ZMV8 503 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 MMABQ96EY8 250 aaPredicted RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 RBM18Q96H35 190 aaKnown RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 POLR2J2Q9GZM3 115 aaKnown RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 MTHFD2LQ9H903 347 aaPredicted RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 NDUFB11Q9NX14 153 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 DNAJC27Q9NZQ0 273 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 PLEKHB1Q9UF11 243 aaPredicted RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 NTNG1Q9Y2I2 539 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 CLCA3PQ9Y6N3 262 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 NPIPA5A0A0B4J1W7 369 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 OR2W5A6NFC9 320 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 NPIPA7E9PJI5 369 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 HBQ1P09105 142 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 CT62P0C5K7 136 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 NPIPA8P0DM63 369 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 PIPP12273 146 aaPredicted RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 GABRA3P34903 492 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 MAP2K3P46734 347 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 AMZ1Q400G9 498 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 TOR2AQ5JU69 321 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 ZC3H14Q6PJT7 736 aaKnown RBP13.13□□□□□ -0.31
LIMD1-202ENST00000440097 PAQR6Q6TCH4 344 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 IQCF1Q8N6M8 205 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 LSMEM1Q8N8F7 131 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 ATP6V1C2Q8NEY4 427 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 SDF2Q99470 211 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 SLC25A19Q9HC21 320 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 SLC23A1Q9UHI7 598 aa13.13□□□□□ -0.31
LIMD1-202ENST00000440097 MPZL2O60487 215 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 SRPX2O60687 465 aaPredicted RBP13.12□□□□□ -0.31
LIMD1-202ENST00000440097 NTN1O95631 604 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 MSL3P1P0C860 447 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 MMP11P24347 488 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 PRICKLE4Q2TBC4 344 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 DCST2Q5T1A1 773 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 CDRT4Q8N9R6 151 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 TMEM203Q969S6 136 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 MCHR1Q99705 422 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 PIGUQ9H490 435 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 MAN2C1Q9NTJ4 1040 aa13.12□□□□□ -0.31
LIMD1-202ENST00000440097 TXNL4BQ9NX01 149 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms