RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KIAA1211LQ6NV74 962 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 LPCAT3Q6P1A2 487 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 FAM198BQ6UWH4 519 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 CDHR3Q6ZTQ4 885 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 C4orf32Q8N8J7 132 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 OR6F1Q8NGZ6 308 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 CNTNAP3BQ96NU0 1288 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM59Q9BXS4 323 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 SLC23A2Q9UGH3 650 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 KDM4FA0A1W2PPD8 638 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 NAP1L6A6NFF2 107 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 MCRIP1C9JLW8 97 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 GALR3O60755 368 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 UGT2B7P16662 529 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 IL1RNP18510 177 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 MAP2K3P46734 347 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 SPHARQ15513 63 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 CTC1Q2NKJ3 1217 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 KHDC1Q4VXA5 237 aaKnown RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 IL20RBQ6UXL0 311 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 MEX3BQ6ZN04 569 aaKnown RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 TRIM73Q86UV7 250 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 TERB2Q8NHR7 220 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 PIGCQ92535 297 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 SAP130Q9H0E3 1048 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 NXF5Q9H1B4 397 aaKnown RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 POT1Q9NUX5 634 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 SLC2A6Q9UGQ3 507 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 RNF24Q9Y225 148 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 VDAC3Q9Y277 283 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 NOSIPQ9Y314 301 aaKnown RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 ITM2AO43736 263 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 LCMT2O60294 686 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ONECUT3O60422 494 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 IL7P13232 177 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PAX6P26367 422 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PPT1P50897 306 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 NCS1P62166 190 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PEA15Q15121 130 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF674Q2M3X9 581 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PCGF3Q3KNV8 242 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 DPY19L2P1Q6NXN4 242 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF765Q7L2R6 523 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PRICKLE2Q7Z3G6 844 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 IQCKQ8N0W5 287 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 EID2Q8N6I1 236 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 OR4K13Q8NH42 304 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TCTEX1D2Q8WW35 142 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TRUB1Q8WWH5 349 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 EDAQ92838 391 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM43Q9BTV4 400 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 RP1L1Q8IWN7 2480 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 KIAA1217Q5T5P2 1943 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 DVL2O14641 736 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PRRG2O14669 202 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 AP1G1O43747 822 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 MRPS14O60783 128 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TUSC2O75896 110 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 STC2O76061 302 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 RASAL1O95294 804 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 METTL15P1P0C7V9 234 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 AKAIN1P0CW23 69 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 DNASE1P24855 282 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 HTR1EP28566 365 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 P2RY2P41231 377 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 EPHA5P54756 1037 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 FRMPD2BQ6IN97 320 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 MOB3CQ70IA8 216 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 MDGA1Q8NFP4 955 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZFPM2Q8WW38 1151 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TOMM40LQ969M1 308 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF419Q96HQ0 510 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 LMF1Q96S06 567 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 BEX2Q9BXY8 128 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 BEX1Q9HBH7 125 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 LRIT1Q9P2V4 623 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PCDHGA5Q9Y5G8 931 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 NUP214P35658 2090 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PHRF1Q9P1Y6 1649 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 M0QZ24 198 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TPT1P13693 172 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PRKACBP22694 351 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 SLC22A6Q4U2R8 563 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF648Q5T619 568 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 CISD2Q8N5K1 135 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 SYT14Q8NB59 555 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 H1FXQ92522 213 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 NPY6RQ99463 290 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 OR2B2Q9GZK3 357 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 INIPQ9NRY2 104 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TRAPPC2LQ9UL33 140 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ASB4Q9Y574 426 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 CDHR4A6H8M9 788 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PIRO00625 290 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 FAM189A1O60320 539 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 RFPL2O75678 378 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 MPIG6BO95866 241 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PRKAR1BP31321 381 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 KDELR2P33947 212 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 NR4A2P43354 598 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms