RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PREPP48147 710 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 PROX2Q3B8N5 592 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 PET117Q6UWS5 81 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 ADGRG3Q86Y34 549 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 KCNRGQ8N5I3 272 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 STT3BQ8TCJ2 826 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF587BE7ETH6 402 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 DENRO43583 198 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 MTX2O75431 263 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 MMP12P39900 470 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 CILP2Q8IUL8 1156 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 HIDE1A8MVS5 230 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 ASGR2P07307 311 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 CD48P09326 243 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 FOXN2P32314 431 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 FAM69BQ5VUD6 431 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 CCDC116Q8IYX3 515 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 RBM24Q9BX46 236 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 OR51B5Q9H339 312 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 MRPL22Q9NWU5 206 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 DUSP11O75319 330 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 HRH2P25021 359 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 PDZD11Q5EBL8 140 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 DRICH1Q6PGQ1 229 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 OR9I1Q8NGQ6 314 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 TRIB1Q96RU8 372 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 P2RX7Q99572 595 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 POLHQ9Y253 713 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 UPK3BL1B0FP48 263 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 UPK3BL2E5RIL1 263 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 TRAPPC2P0DI81 140 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 TRAPPC2BP0DI82 140 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 NTF3P20783 257 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 CDK5Q00535 292 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF776Q68DI1 518 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 OR2M3Q8NG83 312 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 OR51F1A6NGY5 319 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 HLA-DMAP28067 261 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC22A11Q9NSA0 550 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 NPAP1Q9NZP6 1156 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 PCDHA9Q9Y5H5 950 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 DLC1Q96QB1 1528 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 SETBP1Q9Y6X0 1596 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 SULT1C4O75897 302 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 FBXL16Q8N461 479 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 FRMD1Q8N878 549 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 BARX1Q9HBU1 254 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 PREX1Q8TCU6 1659 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 IQSEC2Q5JU85 1478 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 LOC730098B7Z3J9 87 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TRAPPC2LH3BP13 241 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 HOXB5P09067 269 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 C1GALT1C1LP0DN25 315 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SHMT2P34897 504 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 HADHBP55084 474 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 EOGTQ5NDL2 527 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 C9orf131Q5VYM1 1079 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 AGTRAPQ6RW13 159 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 APOOLQ6UXV4 268 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF454Q8N9F8 522 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 OR5P2Q8WZ92 322 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF382Q96SR6 550 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 LHPPQ9H008 270 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 NTSR2O95665 410 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TAP2Q03519 686 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 CATR1Q13166 79 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TESK1Q15569 626 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TMEM201Q5SNT2 666 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 GDPGP1Q6ZNW5 385 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 CYB5D2Q8WUJ1 264 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC45A3Q96JT2 553 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 NDFIP1Q9BT67 221 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ALKQ9UM73 1620 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC38A8A6NNN8 435 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 K7ERQ8 282 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 KLF11O14901 512 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 RPS15AP62244 130 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 H3F3AP84243 136 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 LARP4Q71RC2 724 aaKnown RBP eCLIP12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 KIAA1191Q96A73 305 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 ADGRB3O60242 1522 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 HPNP05981 417 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 MMP3P08254 477 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 GLB1P16278 677 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 IL3RAP26951 378 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 PRRT3Q5FWE3 981 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 TMEM130Q8N3G9 435 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 LINC00116Q8NCU8 138 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 OR4K13Q8NH42 304 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 RALYQ9UKM9 306 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 S100A8P05109 93 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 CDK4P11802 303 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 GSCP56915 257 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 KRTCAP2Q8N6L1 136 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 UBL4AP11441 157 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 HLA-FP30511 346 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC7A9P82251 487 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 KDM1BQ8NB78 822 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 RHEBL1Q8TAI7 183 aa12.6□□□□□ -0.39
CCDC88A-204ENST00000413716 SOX7Q9BT81 388 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms