RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 LSRQ86X29 649 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 C16orf52Q8NHV5 167 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 PIGXQ8TBF5 258 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 CT55Q8WUE5 264 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 FOXN4Q96NZ1 517 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 PARD6AQ9NPB6 346 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 PRDM7Q9NQW5 492 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 B4GALT7Q9UBV7 327 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 FAM172BPA6NC97 362 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 NPIPA5E9PKD4 350 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 HRKO00198 91 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 AIREO43918 545 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 MT-ND2P03891 347 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 CELA2AP08217 269 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 ABOP16442 354 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 ISL1P61371 349 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 TUBA1BP68363 451 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 NKG7Q16617 165 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 ZXDCQ2QGD7 858 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 GXYLT1Q4G148 440 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 ALG10BQ5I7T1 473 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 IKBIPQ70UQ0 350 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 TUBA1AQ71U36 451 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 SIMC1Q8NDZ2 872 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 DYNC2LI1Q8TCX1 351 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 TREX2Q9BQ50 279 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 NPIPA1Q9UND3 350 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 IGKV1-8A0A0C4DH67 115 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF726A6NNF4 738 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CENPXA8MT69 81 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CENPBD1B2RD01 187 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 UPK1AO00322 258 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 EIF1AYO14602 144 aaKnown RBP9.54□□□□□ -0.88
COL6A3-205ENST00000392004 AGR2O95994 175 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 SSR4P51571 173 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 SMIM11AP58511 58 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ODF4Q2M2E3 257 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 GGTA1PQ4G0N0 100 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 SPANXN2Q5MJ10 180 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 LYSMD2Q8IV50 215 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 LAS2Q8IYD9 372 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 OR2B2Q9GZK3 357 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CLMPQ9H6B4 373 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CENPMQ9NSP4 180 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 FBXL4Q9UKA2 621 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CLEC4AQ9UMR7 237 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 SLC22A7Q9Y694 548 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ASPDHA6ND91 283 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 FAM171A2A8MVW0 826 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 RNF13O43567 381 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 PTTG1O95997 202 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 DCTP40126 519 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CASP3P42574 277 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 DNASE1L1P49184 302 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 RRADP55042 308 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 NCF4Q15080 339 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 EIPR1Q53HC9 387 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 FAM71E1Q6IPT2 247 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 NATD1Q8N6N6 113 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 NXPE2Q96DL1 559 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 NUAK2Q9H093 628 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 TOR4AQ9NXH8 423 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 DOCK7Q96N67 2140 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ITGA10O75578 1167 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CCNB2O95067 398 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 IGHV3-9P01782 118 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 SLC35E2P0CK97 266 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CD46P15529 392 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 NUDT6P53370 316 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 HSD17B7P56937 341 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 PPP2R2BQ00005 443 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 FAM53BQ14153 422 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 DESI1Q6ICB0 168 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF544Q6NX49 715 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 METTL2BQ6P1Q9 378 aaKnown RBP9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CCBE1Q6UXH8 406 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-205ENST00000392004 PTCHD4Q6ZW05 846 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 GALNTL5Q7Z4T8 443 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF605Q86T29 641 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 KBTBD8Q8NFY9 601 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 OR8J3Q8NGG0 315 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 BRIX1Q8TDN6 353 aaKnown RBP9.54□□□□□ -0.88
COL6A3-205ENST00000392004 DACT3Q96B18 629 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-205ENST00000392004 OMA1Q96E52 524 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 DHRS1Q96LJ7 313 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 GALNT9Q9HCQ5 603 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 POLHQ9Y253 713 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 WBP11Q9Y2W2 641 aaKnown RBP9.54□□□□□ -0.88
COL6A3-205ENST00000392004 CCDC168Q8NDH2 2452 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 PATJQ8NI35 1801 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 MPDZO75970 2070 aa9.54□□□□□ -0.88
COL6A3-205ENST00000392004 ACOT7O00154 380 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PRSS23O95084 383 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SNX4O95219 450 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 NAT2P11245 290 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PCMT1P22061 227 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 PDX1P52945 283 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 SIRPAP78324 504 aa9.53□□□□□ -0.88
COL6A3-205ENST00000392004 ZFP69Q49AA0 526 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms