RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 KCNK2O95069 426 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 RCBTB2O95199 551 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 LIMS3P0CW19 117 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 LIMS4P0CW20 117 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 PRG2P13727 222 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 IGLV3-21P80748 117 aaPredicted RBP19.92■□□□□ 0.78
TRIM54-202ENST00000380075 ACSM1Q08AH1 577 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 SF3A2Q15428 464 aaKnown RBP19.92■□□□□ 0.78
TRIM54-202ENST00000380075 FLYWCH1Q4VC44 716 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 TMPRSS11FQ6ZWK6 438 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 COQ7Q99807 217 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 MED18Q9BUE0 208 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 OR52D1Q9H346 318 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 PCDHGB6Q9Y5F9 930 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 OTOGLQ3ZCN5 2332 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 KNL1Q8NG31 2342 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 LILRA5A6NI73 299 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 SLC30A4O14863 429 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 HCRTR1O43613 425 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 CTNSO60931 367 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 IGHA1P01876 353 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 CSF2P04141 144 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 ZNF806P0C7X5 589 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 GKN3PP0CG01 181 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 BMP7P18075 431 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 SLC1A3P43003 542 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 CAPZBP47756 277 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 FAM53BQ14153 422 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 DEFB110Q30KQ9 67 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 AMZ1Q400G9 498 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 ARMC4Q5T2S8 1044 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 GKN2Q86XP6 184 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 OR6C4Q8NGE1 309 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 OR52N1Q8NH53 320 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 FANK1Q8TC84 345 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 DOK4Q8TEW6 326 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 ZNF578Q96N58 590 aaPredicted RBP19.92■□□□□ 0.78
TRIM54-202ENST00000380075 NEURL2Q9BR09 285 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 SLC30A2Q9BRI3 323 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 FOLH1BQ9HBA9 442 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 PARD6AQ9NPB6 346 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 TXNL4BQ9NX01 149 aaKnown RBP19.92■□□□□ 0.78
TRIM54-202ENST00000380075 DOLKQ9UPQ8 538 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 MED31Q9Y3C7 131 aa19.92■□□□□ 0.78
TRIM54-202ENST00000380075 MN1Q10571 1320 aaPredicted RBP19.91■□□□□ 0.78
TRIM54-202ENST00000380075 SLC9B1P1A6NJY1 282 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 CH25HO95992 272 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 PTTG1O95997 202 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 IFI30P13284 250 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 S1PR1P21453 382 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 GABRA5P31644 462 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 CTBP2P56545 445 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 COL9A2Q14055 689 aaPredicted RBP19.91■□□□□ 0.78
TRIM54-202ENST00000380075 OR2G6Q5TZ20 316 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 GARNL3Q5VVW2 1013 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 STEAP3Q658P3 488 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 SLC43A2Q8N370 569 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 ZNF485Q8NCK3 441 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 ITPKCQ96DU7 683 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 TRMT61AQ96FX7 289 aaKnown RBP19.91■□□□□ 0.78
TRIM54-202ENST00000380075 WDFY2Q96P53 400 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 QPCTLQ9NXS2 382 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 CBLCQ9ULV8 474 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 TRAPPC4Q9Y296 219 aa19.91■□□□□ 0.78
TRIM54-202ENST00000380075 NPIPA5A0A0B4J1W7 369 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 TTC36A6NLP5 189 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 NPIPA7E9PJI5 369 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 WWP2O00308 870 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 CLDN4O14493 209 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 NSA2O95478 260 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 NPIPA8P0DM63 369 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 NME1P15531 152 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 MAZP56270 477 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 PSG6Q00889 435 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 STX4Q12846 297 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 SLC13A2Q13183 592 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 DNASE1L3Q13609 305 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 WDR88Q6ZMY6 472 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 ARL14Q8N4G2 192 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 KLHL36Q8N4N3 616 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 TM9SF4Q92544 642 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 RIT1Q92963 219 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 SLC25A46Q96AG3 418 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 RBM18Q96H35 190 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 KCTD7Q96MP8 289 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 ZNF285Q96NJ3 590 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 KCNS3Q9BQ31 491 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 DPH1Q9BZG8 443 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 GSTK1Q9Y2Q3 226 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 SF3B6Q9Y3B4 125 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 A0A0A6YYC8 382 aaPredicted RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 I3L1I5 382 aaPredicted RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 CHP2O43745 196 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 PROS1P07225 676 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 FGF9P31371 208 aaPredicted RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 RBM34P42696 430 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 PSMD4P55036 377 aaKnown RBP19.9■□□□□ 0.78
TRIM54-202ENST00000380075 DEFA1P59665 94 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 DEFA3P59666 94 aa19.9■□□□□ 0.78
TRIM54-202ENST00000380075 TBC1D25Q3MII6 688 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms