RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 MTCH2Q9Y6C9 303 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 COL6A3P12111 3177 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 F5P12259 2224 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 CENPVL1A0A0U1RR11 272 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 TOXO94900 526 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 MT-ND4P03905 459 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 HMGN1P05114 100 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 CERS1P27544 350 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 ZNF81P51508 661 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 FXYD6P3P58550 94 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 RPS7P62081 194 aaKnown RBP13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 ARHGAP19Q14CB8 494 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 TMEM44Q2T9K0 475 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 CDONQ4KMG0 1287 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 NIPAL3Q6P499 406 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 MEPCEQ7L2J0 689 aaKnown RBP13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 PRSS45Q7RTY3 260 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 TOMM5Q8N4H5 51 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 DOK4Q8TEW6 326 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 SLC35A4Q96G79 324 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 SORCS2Q96PQ0 1159 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 OR51V1Q9H2C8 321 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 SYNDIG1Q9H7V2 258 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 SYNPO2LQ9H987 977 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 TMEM5Q9Y2B1 443 aa13.12□□□□□ -0.31
CLCNKA-202ENST00000375692 SCN3AQ9NY46 2000 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 J3QLW9 94 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 HYAL3O43820 417 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PCCBP05166 539 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CLUP10909 449 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 LAMP2P13473 410 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ADRB3P13945 408 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 SNRPBP14678 240 aaKnown RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ZNF19P17023 458 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 DRD5P21918 477 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 GALP22466 123 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 HIST1H1TP22492 207 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 TRA2BP62995 288 aaKnown RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 POU6F2P78424 691 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CAMK2DQ13557 499 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PXDC1Q5TGL8 231 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PYHIN1Q6K0P9 492 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CDC73Q6P1J9 531 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 LUZP2Q86TE4 346 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 FBXL6Q8N531 539 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 SLC16A11Q8NCK7 471 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 OR56A1Q8NGH5 318 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 GANCQ8TET4 914 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 YIPF5Q969M3 257 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ELP4Q96EB1 424 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 MSANTD3Q96H12 275 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 FERD3LQ96RJ6 166 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ORAI3Q9BRQ5 295 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 OR52D1Q9H346 318 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ERVMER34-1Q9H9K5 563 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 TRIM36Q9NQ86 728 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PRDM7Q9NQW5 492 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 KLHL28Q9NXS3 571 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ENTPD4Q9Y227 616 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 GPR171O14626 319 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 MAGEB4O15481 346 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 EMC8O43402 210 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CLEC3AO75596 197 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CFDP00746 253 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PRNPP04156 253 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PRG2P13727 222 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 F8A1P23610 371 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 VSX2P58304 361 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PRR5P85299 388 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 DPTQ07507 201 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 EXOSC2Q13868 293 aaKnown RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ZNF267Q14586 743 aaPredicted RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CD276Q5ZPR3 534 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 METRNLQ641Q3 311 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 DGLUCYQ7Z3D6 616 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 COMMD7Q86VX2 200 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ETFBKMTQ8IXQ9 262 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 IZUMO1Q8IYV9 350 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PFN4Q8NHR9 129 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 CEP76Q8TAP6 659 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PTP4A1Q93096 173 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 MS4A6EQ96DS6 147 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 AHCYL2Q96HN2 611 aaKnown RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 C20orf141Q9NUB4 165 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 MRPL39Q9NYK5 338 aaKnown RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 NKIRAS2Q9NYR9 191 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 NLGN3Q9NZ94 848 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 MRPL15Q9P015 296 aaKnown RBP13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 ZMIZ1Q9ULJ6 1067 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 NUBP2Q9Y5Y2 271 aa13.11□□□□□ -0.31
CLCNKA-202ENST00000375692 PRR23AA6NEV1 266 aa13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 ADH1CP00326 375 aa13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 CSNK2A2P19784 350 aaPredicted RBP13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 MAKP20794 623 aa13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 ATP5A1P25705 553 aaKnown RBP13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 TEAD1P28347 426 aa13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 OR12D2P58182 307 aa13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 PRDX1Q06830 199 aaKnown RBP13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 WDR88Q6ZMY6 472 aa13.1□□□□□ -0.31
CLCNKA-202ENST00000375692 CACUL1Q86Y37 369 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms