RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CHP2O43745 196 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF354AO60765 605 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 REM1O75628 298 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 NGFRP08138 427 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 FUT1P19526 365 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 MAKP20794 623 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 TBXA2RP21731 343 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 ABCD3P28288 659 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 MASP1P48740 699 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 MVKQ03426 396 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 EMX1Q04741 257 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 SKP2Q13309 424 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 CCDC157Q569K6 752 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 HLA-DQA1Q5Y7H0 255 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 PAPD4Q6PIY7 484 aaKnown RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 CBLN3Q6UW01 205 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 PTCHD4Q6ZW05 846 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 AHSA2Q719I0 299 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF550Q7Z398 422 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 GPR141Q7Z602 305 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 C17orf47Q8NEP4 570 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 METTL21AQ8WXB1 218 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 FGF11Q92914 225 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 OMA1Q96E52 524 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 LRFN5Q96NI6 719 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 ULBP3Q9BZM4 244 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 TRIM2Q9C040 744 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 SLC39A1Q9NY26 324 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 PSORS1C1Q9UIG5 152 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 SLC35A3Q9Y2D2 325 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 PCDHGB1Q9Y5G3 927 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 TMEM200CA6NKL6 621 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 B4E171 279 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 KPNA4O00629 521 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 MT-ND2P03891 347 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 TSPAN7P41732 249 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 FXYD6P3P58550 94 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 SNRPGP62308 76 aaKnown RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 EFNB1P98172 346 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 INSM1Q01101 510 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 PLCXD2Q0VAA5 305 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 LINC00114Q6XXX2 140 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF620Q6ZNG0 422 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 CPEB2Q7Z5Q1 589 aaKnown RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 RNF113BQ8IZP6 322 aaKnown RBP12.65□□□□□ -0.38
PTPRF-202ENST00000372405 SLC34A3Q8N130 599 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 OR13F1Q8NGS4 319 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 RNF217Q8TC41 542 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 OIT3Q8WWZ8 545 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 GGHQ92820 318 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 EDEM2Q9BV94 578 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 DPH1Q9BZG8 443 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 YIPF3Q9GZM5 350 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 CCDC90BQ9GZT6 254 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 LHPPQ9H008 270 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 WDR54Q9H977 334 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 SLC25A19Q9HC21 320 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 IL20Q9NYY1 176 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 B3GALT1Q9Y5Z6 326 aa12.65□□□□□ -0.38
PTPRF-202ENST00000372405 MPDZO75970 2070 aa12.65□□□□□ -0.39
PTPRF-202ENST00000372405 SCDO00767 359 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 PRKYO43930 277 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 ADRA2AP08913 450 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 STAT5AP42229 794 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 MAP2K4P45985 399 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 CSNK2BP67870 215 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 PRKCDQ05655 676 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 SPEM2Q0P670 501 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 ALG10BQ5I7T1 473 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 BCDIN3DQ7Z5W3 292 aaKnown RBP12.64□□□□□ -0.39
PTPRF-202ENST00000372405 MRGPREQ86SM8 312 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 CADM2Q8N3J6 435 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 ZNF527Q8NB42 609 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 PHOSPHO1Q8TCT1 267 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 FAR1Q8WVX9 515 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 HSPBAP1Q96EW2 488 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 CMKLR1Q99788 373 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 GPR83Q9NYM4 423 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 TVP23BQ9NYZ1 205 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 SELENONQ9NZV5 590 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 MRTO4Q9UKD2 239 aaKnown RBP12.64□□□□□ -0.39
PTPRF-202ENST00000372405 CARD8Q9Y2G2 431 aa12.64□□□□□ -0.39
PTPRF-202ENST00000372405 CLCA1A8K7I4 914 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 ADAM10O14672 748 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 RGS10O43665 173 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 MPZL2O60487 215 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 ENTPD6O75354 484 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 KLF7O75840 302 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 SEC14L2O76054 403 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 UMODP07911 640 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 UBL4AP11441 157 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 IFI30P13284 250 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 HPGDP15428 266 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 MST1P26927 711 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 IL12BP29460 328 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 C21orf33P30042 268 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-202ENST00000372405 CLEC12AQ5QGZ9 265 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 TMEM201Q5SNT2 666 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 HSDL2Q6YN16 418 aa12.63□□□□□ -0.39
PTPRF-202ENST00000372405 PRSS48Q7RTY5 328 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms