RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DUSP18Q8NEJ0 188 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 CCL4L1Q8NHW4 92 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 ZMYND19Q96E35 227 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 PTCHD1Q96NR3 888 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 MARVELD1Q9BSK0 173 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 GON7Q9BXV9 100 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 BRD7Q9NPI1 651 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 SLC27A6Q9Y2P4 619 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 SCO1O75880 301 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 TIMP1P01033 207 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 MT-ND4P03905 459 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 FCER2P06734 321 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 LINC00271P0C7V0 271 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 NAT1P18440 290 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 MAGEB1P43366 347 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 PITPNBP48739 271 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 SRSF5Q13243 272 aaKnown RBP11.27□□□□□ -0.6
CLIP3-201ENST00000360535 CRMP1Q14194 572 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 CST6Q15828 149 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 LAMTOR1Q6IAA8 161 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 MFSD12Q6NUT3 480 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 TMEM64Q6YI46 380 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 PRR23CQ6ZRP0 262 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 LRRC25Q8N386 305 aaPredicted RBP11.27□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF671Q8TAW3 534 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 SUN5Q8TC36 379 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF559Q9BR84 538 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF649Q9BS31 505 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 NDC1Q9BTX1 674 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 CALML5Q9NZT1 146 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 CES1P1Q9UKY3 287 aa11.27□□□□□ -0.6
CLIP3-201ENST00000360535 AK6Q9Y3D8 172 aaKnown RBP11.27□□□□□ -0.6
CLIP3-201ENST00000360535 SEC16AO15027 2179 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 FAM171A2A8MVW0 826 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SLC43A1O75387 559 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 DHFRP00374 187 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 CXCL3P19876 107 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 OR3A3P47888 321 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 MNX1P50219 401 aaPredicted RBP11.27□□□□□ -0.61
CLIP3-201ENST00000360535 OR1Q1Q15612 314 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 NNATQ16517 81 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 TMEM31Q5JXX7 168 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SFRP4Q6FHJ7 346 aaPredicted RBP11.27□□□□□ -0.61
CLIP3-201ENST00000360535 NIPAL3Q6P499 406 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SERPINA12Q8IW75 414 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 TOMM5Q8N4H5 51 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 COX18Q8N8Q8 333 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 GALNT6Q8NCL4 622 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 OR5J2Q8NH18 312 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SFXN5Q8TD22 340 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 TMEM239Q8WW34 195 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 DNAJA3Q96EY1 480 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 CHIAQ9BZP6 476 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 FN3KQ9H479 309 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 STARD5Q9NSY2 213 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 STMN3Q9NZ72 180 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 CACNG2Q9Y698 323 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 A0A1W2PQU0 124 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 CDHR4A6H8M9 788 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 FAM86C2PA6NEL3 165 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SYT5O00445 386 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SLC19A2O60779 497 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 FZD7O75084 574 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 HTR2AP28223 471 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 PKLRP30613 574 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 PSMB10P40306 273 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 DGCR2P98153 550 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 FZD5Q13467 585 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 ACSM3Q53FZ2 586 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SSX6Q7RTT6 188 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 PRSS41Q7RTY9 318 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 RANBP3LQ86VV4 465 aaPredicted RBP11.27□□□□□ -0.61
CLIP3-201ENST00000360535 CDK20Q8IZL9 346 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF433Q8N7K0 673 aaPredicted RBP11.27□□□□□ -0.61
CLIP3-201ENST00000360535 OR5M3Q8NGP4 307 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 OR4K13Q8NH42 304 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 OR52N1Q8NH53 320 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 ABHD4Q8TB40 342 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 PTP4A1Q93096 173 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 HS6ST2Q96MM7 605 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF681Q96N22 645 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 COQ7Q99807 217 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 SPRTNQ9H040 489 aaPredicted RBP11.27□□□□□ -0.61
CLIP3-201ENST00000360535 C11orf49Q9H6J7 331 aa11.27□□□□□ -0.61
CLIP3-201ENST00000360535 MTHFD2LQ9H903 347 aaPredicted RBP11.27□□□□□ -0.61
CLIP3-201ENST00000360535 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 TEX13CA0A0J9YWL9 993 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 LRRN3E7EW58 273 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 SSNA1O43805 119 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 OR5F1O95221 314 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 KAT7O95251 611 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 GNRH1P01148 92 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 PVRP15151 417 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 P2RX3P56373 397 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 FXYD6P3P58550 94 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 FOXK2Q01167 660 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 ZIC1Q15915 447 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 RPE65Q16518 533 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 AGBL4Q5VU57 503 aa11.26□□□□□ -0.61
CLIP3-201ENST00000360535 HBMQ6B0K9 141 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms