RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DCDC1P59894 354 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 MAGOHP61326 146 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 OR8G1Q15617 311 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DHRS7BQ6IAN0 325 aaPredicted RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 C20orf204Q6ZNR8 217 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SCUBE1Q8IWY4 988 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 WBP1Q96G27 269 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUSP9Q99956 384 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 PECRQ9BY49 303 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TMEM14AQ9Y6G1 99 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 CENPXA8MT69 81 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 A8MV72 311 aaPredicted RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SERPINB10P48595 397 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TAS2R38P59533 333 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ETFDHQ16134 617 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TIGD2Q4W5G0 525 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 NCBP2-AS2Q69YL0 99 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ADNP2Q6IQ32 1131 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF433Q8N7K0 673 aaPredicted RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 OR5AK3PQ8NH89 298 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ABHD4Q8TB40 342 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 NANPQ8TBE9 248 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ZG16BQ96DA0 208 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 C19orf60Q96EN9 201 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 MRGPRX3Q96LB0 322 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 MROQ9BYG7 248 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 KLHL42Q9P2K6 505 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 KCNN3Q9UGI6 736 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 LAMP5Q9UJQ1 280 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DIDO1Q9BTC0 2240 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 A0A1B0GW55 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 PPM1DO15297 605 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TPST2O60704 377 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 IL3P08700 152 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4L2P0CJ85 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4L3P0CJ86 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4L4P0CJ87 422 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4L5P0CJ88 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4L6P0CJ89 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4L7P0CJ90 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 IL2RGP31785 369 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ABRAXAS1Q6UWZ7 409 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 KANSL1Q7Z3B3 1105 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 CUZD1Q86UP6 607 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SETD9Q8NE22 299 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 CYSLTR2Q9NS75 346 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 IL17CQ9P0M4 197 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DUX4Q9UBX2 424 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SAMHD1Q9Y3Z3 626 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ANKRD12Q6UB98 2062 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 BCHEP06276 602 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 PRKXP51817 358 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 F2RL1P55085 397 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 PCBP3P57721 371 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SELENBP1Q13228 472 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ACSM5Q6NUN0 579 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 BRICD5Q6PL45 260 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ARHGAP36Q6ZRI8 547 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 PRSS42Q7Z5A4 293 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 GOLM1Q8NBJ4 401 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 OR51D1Q8NGF3 324 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 OR6N2Q8NGY6 317 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TTC9Q92623 222 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 RNF145Q96MT1 663 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 REEP4Q9H6H4 257 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 IFT46Q9NQC8 304 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 MED11Q9P086 117 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TRIM64CA6NLI5 447 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 CLCA1A8K7I4 914 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SPRY3O43610 288 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 TGM4P49221 684 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 PIGFQ07326 219 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 GANABQ14697 944 aaKnown RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 GSG1Q2KHT4 349 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF829Q3KNS6 432 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 ARCQ7LC44 396 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 OR5T2Q8NGG2 359 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 ALG3Q92685 438 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SLC25A28Q96A46 364 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 LRRC1Q9BTT6 524 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 MARCH7Q9H992 704 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SDHAF2Q9NX18 166 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 RAB21Q9UL25 225 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 RNF150Q9ULK6 438 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 FADS2P1A8MWK0 482 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 K7ENP7 123 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 YIF1AO95070 293 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 CPMP14384 443 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SCTRP47872 440 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 INO80CQ6PI98 192 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 ZCCHC23Q6ZST2 131 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 LINGO2Q7L985 606 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 DPPA2Q7Z7J5 298 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SLCO6A1Q86UG4 719 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 VRK2Q86Y07 508 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 MUC20Q8N307 709 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 MARVELD2Q8N4S9 558 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 YIPF7Q8N8F6 280 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 KIFC1Q9BW19 673 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms