RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZG16BQ96DA0 208 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 SLC52A3Q9NQ40 469 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 A0A087WZY1 265 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 KIAA0513O60268 411 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 MGRN1O60291 552 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 UBOX5O94941 541 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 PRF1P14222 555 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 HOXB9P17482 250 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 IGFBP2P18065 325 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 P2RX1P51575 399 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 TOMM34Q15785 309 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 SYPL1Q16563 259 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ATAD3BQ5T9A4 648 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 SLC2A7Q6PXP3 512 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 BLOC1S3Q6QNY0 202 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 GTPBP8Q8N3Z3 284 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 STON2Q8WXE9 905 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ITCHQ96J02 903 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 RMND5AQ9H871 391 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 CCDC167Q9P0B6 97 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 DCTN4Q9UJW0 460 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 WDR45Q9Y484 360 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 C7orf72A4D263 438 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 SERINC4A6NH21 518 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 H3BNH8 94 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 H6PDO95479 791 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 TGM6O95932 706 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ZNF17P17021 662 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ZNF41P51814 821 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 CHRNEQ04844 493 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 RIPK1Q13546 671 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 MAPK11Q15759 364 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 GPAT3Q53EU6 434 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 GGNQ86UU5 652 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ZNF619Q8N2I2 560 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ANKFN1Q8N957 763 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 GPR119Q8TDV5 335 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 SMPDL3BQ92485 455 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ZBTB8AQ96BR9 441 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 AURKBQ96GD4 344 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 RNF145Q96MT1 663 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 TREX2Q9BQ50 279 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 PAIP1Q9H074 479 aaKnown RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 TPT1P8Q9HAU6 139 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 POLE3Q9NRF9 147 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 ZNF629Q9UEG4 869 aaPredicted RBP14.26□□□□□ -0.13
CLN3-201ENST00000333496 L3MBTL1Q9Y468 752 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 PCDHB14Q9Y5E9 798 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 AP4B1Q9Y6B7 739 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 NAV2Q8IVL1 2488 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 CSMD2Q7Z408 3487 aa14.26□□□□□ -0.13
CLN3-201ENST00000333496 GTPBP1O00178 669 aaKnown RBP14.25□□□□□ -0.13
CLN3-201ENST00000333496 ZNF264O43296 627 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 SEC14L5O43304 696 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 BCAS1O75363 584 aaPredicted RBP14.25□□□□□ -0.13
CLN3-201ENST00000333496 RCBTB2O95199 551 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 ANP32DO95626 131 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 KRT75O95678 551 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 CHRM4P08173 479 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 BMP5P22003 454 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 ATP4BP51164 291 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 AGFG1P52594 562 aaKnown RBP14.25□□□□□ -0.13
CLN3-201ENST00000333496 ELF3P78545 371 aaPredicted RBP14.25□□□□□ -0.13
CLN3-201ENST00000333496 FOXF2Q12947 444 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 BNIP1Q12981 228 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 FGFBP1Q14512 234 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 SLC25A35Q3KQZ1 300 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 C6orf10Q5SRN2 563 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 HMGN2P46Q86SG4 172 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 MEIOBQ8N635 442 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 WNT2BQ93097 391 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 SPDL1Q96EA4 605 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 ARSGQ96EG1 525 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 TACO1Q9BSH4 297 aaKnown RBP14.25□□□□□ -0.13
CLN3-201ENST00000333496 QRSL1Q9H0R6 528 aaKnown RBP14.25□□□□□ -0.13
CLN3-201ENST00000333496 SLC38A1Q9H2H9 487 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 ZNF385DQ9H6B1 395 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 RUBCNLQ9H714 662 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 MPDZO75970 2070 aa14.25□□□□□ -0.13
CLN3-201ENST00000333496 A0A0G2JND7 137 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 EFNA2O43921 213 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 EIF4E2O60573 245 aaKnown RBP14.24□□□□□ -0.13
CLN3-201ENST00000333496 DCTN3O75935 186 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 ATP5HO75947 161 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 UBL4AP11441 157 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 COX6B1P14854 86 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 CAPN3P20807 821 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 IL11P20809 199 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 GTF2A1P52655 376 aaPredicted RBP14.24□□□□□ -0.13
CLN3-201ENST00000333496 ARFIP2P53365 341 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 SUMO3P55854 103 aaPredicted RBP14.24□□□□□ -0.13
CLN3-201ENST00000333496 NCALDP61601 193 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 TXNL4AP83876 142 aaKnown RBP14.24□□□□□ -0.13
CLN3-201ENST00000333496 PLAURQ03405 335 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 SKP2Q13309 424 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 CTU2Q2VPK5 515 aaKnown RBP14.24□□□□□ -0.13
CLN3-201ENST00000333496 PAGE3Q5JUK9 113 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 ZNF295-AS1Q8N0V1 137 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 METTL25Q8N6Q8 603 aa14.24□□□□□ -0.13
CLN3-201ENST00000333496 ZNF845Q96IR2 970 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms