RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PWWP2BQ6NUJ5 590 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 OVCH1Q7RTY7 1134 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 HDDC2Q7Z4H3 204 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 GPAT4Q86UL3 456 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 DDIT4LQ96D03 193 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 C10orf90Q96M02 699 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 TAAR9Q96RI9 348 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 SAP130Q9H0E3 1048 aa10.72□□□□□ -0.69
VPS4A-201ENST00000254950 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-201ENST00000254950 CASKO14936 926 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 FOXS1O43638 330 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 INMTO95050 263 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF24P17028 368 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 KDM4DQ6B0I6 523 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 PSD4Q8NDX1 1056 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 OR52E2Q8NGJ4 325 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 MCFD2Q8NI22 146 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 KCNN2Q9H2S1 579 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 TPK1Q9H3S4 243 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 EXO1Q9UQ84 846 aaKnown RBP10.71□□□□□ -0.69
VPS4A-201ENST00000254950 PCDHGB5Q9Y5G0 923 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 IGHV5-10-1A0A0J9YXX1 117 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 TACSTD2P09758 323 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 MTNR1AP48039 350 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 CRTC2Q53ET0 693 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-201ENST00000254950 OR4K13Q8NH42 304 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 PNPLA2Q96AD5 504 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF681Q96N22 645 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF717Q9BY31 904 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-201ENST00000254950 LHX9Q9NQ69 397 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 GPR52Q9Y2T5 361 aa10.71□□□□□ -0.69
VPS4A-201ENST00000254950 NUP210Q8TEM1 1887 aaPredicted RBP10.71□□□□□ -0.7
VPS4A-201ENST00000254950 GPR179Q6PRD1 2367 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 CLCA1A8K7I4 914 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 H3BSA7 217 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 STK17BO94768 372 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 APOL3O95236 402 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 PPP1R3DO95685 299 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 KRT8P05787 483 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 CDK4P11802 303 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 CXCR4P61073 352 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 ILKQ13418 452 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 MZT2AQ6P582 158 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 SLCO6A1Q86UG4 719 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 ZBTB46Q86UZ6 589 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 NAXDQ8IW45 347 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 CHDHQ8NE62 594 aaPredicted RBP10.71□□□□□ -0.7
VPS4A-201ENST00000254950 TP53INP1Q96A56 240 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 FER1L6-AS2Q96M78 137 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 ADAD1Q96M93 576 aaKnown RBP10.71□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF350Q9GZX5 532 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 RACGAP1Q9H0H5 632 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 TIMMDC1Q9NPL8 285 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 PTTG2Q9NZH5 202 aa10.71□□□□□ -0.7
VPS4A-201ENST00000254950 FARSAQ9Y285 508 aaKnown RBP10.71□□□□□ -0.7
VPS4A-201ENST00000254950 FRG2CA6NGY1 282 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF670-ZNF695F2Z2N8 137 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SLC16A6O15403 523 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 CHP2O43745 196 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 EIF4E2O60573 245 aaKnown RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 PIGAP37287 484 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ITGADQ13349 1161 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ALG10Q5BKT4 473 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 PLBD1Q6P4A8 553 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 RASSF6Q6ZTQ3 369 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ANKK1Q8NFD2 765 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 OR1N1Q8NGS0 311 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 OR14L1PQ8NHC6 308 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 AP3S1Q92572 193 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ANKRD9Q96BM1 317 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 NIPSNAP1Q9BPW8 284 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 NUDT9Q9BW91 350 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 KLHL21Q9UJP4 597 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 CES1P1Q9UKY3 287 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 RP1L1Q8IWN7 2480 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 CNOT1A5YKK6 2376 aaKnown RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 A0A1W2PS29 197 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 H3BML4 177 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ARHGEF9O43307 516 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 TACR3P29371 465 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 MAGEA2P43356 314 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 PGGHGQ32M88 737 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SLC23A3Q6PIS1 610 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 PRSS48Q7RTY5 328 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 CPOQ8IVL8 374 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 OR2AJ1Q8NGZ0 328 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 VOPP1Q96AW1 172 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SECISBP2Q96T21 854 aaKnown RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SEC61A2Q9H9S3 476 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 TRIM36Q9NQ86 728 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SEMA4GQ9NTN9 838 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 GPR83Q9NYM4 423 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 UBAP1Q9NZ09 502 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SHISA7A6NL88 538 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 TNFSF15O95150 251 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 PEPDP12955 493 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ITIH1P19827 911 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 LCN1P31025 176 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 PCBP3P57721 371 aaKnown RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SLC26A5P58743 744 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms