RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ING5Q8WYH8 240 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 AP1M2Q9Y6Q5 423 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 SCN2AQ99250 2005 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 GNB5O14775 395 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 GKN3PP0CG01 181 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 NAA10P41227 235 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 RGS8P57771 180 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 ZNF169Q14929 603 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 IGSF11Q5DX21 431 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 ENTPD8Q5MY95 495 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 C6orf132Q5T0Z8 1188 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 HEPHL1Q6MZM0 1159 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 C22orf39Q6P5X5 142 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 LILRB1Q8NHL6 650 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 GNPDA2Q8TDQ7 276 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 OR5P2Q8WZ92 322 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 ZNF578Q96N58 590 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 EFCAB11Q9BUY7 163 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 ZCCHC2Q9C0B9 1178 aaKnown RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 GLIPR2Q9H4G4 154 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 EVA1AQ9H8M9 152 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 SERTM1A2A2V5 107 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 OR1F1O43749 312 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 ADAMTS4O75173 837 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 RP2O75695 350 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 ACHEP22303 614 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 PGGHGQ32M88 737 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 C9orf64Q5T6V5 341 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 DNAJB7Q7Z6W7 309 aaPredicted RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 ANKRD53Q8N9V6 530 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 KCTD12Q96CX2 325 aaKnown RBP13.37□□□□□ -0.27
SDC1-201ENST00000254351 PPP1R16AQ96I34 528 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 HRASLSQ9HDD0 168 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 ACSL5Q9ULC5 683 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 SLC7A7Q9UM01 511 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 PCDHGA5Q9Y5G8 931 aa13.37□□□□□ -0.27
SDC1-201ENST00000254351 SCN3AQ9NY46 2000 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 A0A087WV48 116 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 CDHR4A6H8M9 788 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 SUSD5O60279 629 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 LEFTY1O75610 366 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ATG12O94817 140 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 RLN2P04090 185 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 CLTBP09497 229 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 GSTM3P21266 225 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 RPL3P39023 403 aaKnown RBP13.36□□□□□ -0.27
SDC1-201ENST00000254351 TSPAN31Q12999 210 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ODF4Q2M2E3 257 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 LINC00303Q3SY05 128 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 CMTM4Q8IZR5 234 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 OR2T33Q8NG76 320 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 TEX12Q9BXU0 123 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 MLXQ9UH92 298 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 LRFN2Q9ULH4 789 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 A0A0G2JK05 382 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 IRGMA1A4Y4 181 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ACOD1A6NK06 481 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ZNF98A6NK75 572 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ZNF35P13682 527 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 PSMB1P20618 241 aaKnown RBP13.36□□□□□ -0.27
SDC1-201ENST00000254351 METAP1P53582 386 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 FUT5Q11128 374 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 NDUFA9Q16795 377 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 CCNJQ5T5M9 372 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 TFAP2EQ6VUC0 442 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 FGD2Q7Z6J4 655 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 TMCO2Q7Z6W1 182 aaPredicted RBP13.36□□□□□ -0.27
SDC1-201ENST00000254351 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.36□□□□□ -0.27
SDC1-201ENST00000254351 IL17RCQ8NAC3 791 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 PTP4A1Q93096 173 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 OTUB2Q96DC9 234 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 IFT27Q9BW83 186 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ASB6Q9NWX5 421 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ACAD8Q9UKU7 415 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 ERVK-19Q9WJR5 959 aa13.36□□□□□ -0.27
SDC1-201ENST00000254351 TRAV27A0A087WT01 109 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 MCRIP1C9JLW8 97 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 NEDD8-MDP1E9PL57 170 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SDC3O75056 442 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 UBL3O95164 117 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 CKBP12277 381 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 HTR1FP30939 366 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 CCR9P51686 369 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PRPF38BQ5VTL8 546 aaKnown RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 TMUB2Q71RG4 321 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SLITRK4Q8IW52 837 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 BVESQ8NE79 360 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PFN4Q8NHR9 129 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 ZDHHC1Q8WTX9 485 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 HERVK_113Q902F9 699 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 SLC38A3Q99624 504 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 MCHR1Q99705 422 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 NDC1Q9BTX1 674 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 UBQLN3Q9H347 655 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 TAS2R3Q9NYW6 316 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 PIPOXQ9P0Z9 390 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 NPIPA5A0A0B4J1W7 369 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 NPIPA7E9PJI5 369 aa13.35□□□□□ -0.27
SDC1-201ENST00000254351 TBX6O95947 436 aaPredicted RBP13.35□□□□□ -0.27
SDC1-201ENST00000254351 NPIPA8P0DM63 369 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms