RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MRPL52Q86TS9 123 aaKnown RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 RGL4Q8IZJ4 473 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CREB3L4Q8TEY5 395 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM169Q96HH4 297 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 HIST1H2AAQ96QV6 131 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 G6PC3Q9BUM1 346 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 C1QTNF2Q9BXJ5 285 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 OR2AG1Q9H205 316 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 Q9N2J8 555 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 MYOZ2Q9NPC6 264 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 EPHA6Q9UF33 1036 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 KIDINS220Q9ULH0 1771 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 OR2C1O95371 312 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ELFN1P0C7U0 828 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 C21orf33P30042 268 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SSTR2P30874 369 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 KCNC1P48547 511 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 DSC2Q02487 901 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 VWA2Q5GFL6 755 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 DNLZQ5SXM8 178 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 OVCA2Q8WZ82 227 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 HIPK2Q9H2X6 1198 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 RAB9BQ9NP90 201 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SLC17A5Q9NRA2 495 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 MYH8P13535 1937 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 RFPL4AA6NLU0 287 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 RFPL4AL1F8VTS6 287 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 KDELR3O43731 214 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 GPR37L1O60883 481 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SCGB2A1O75556 95 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 GPLD1P80108 840 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SLBPQ14493 270 aaKnown RBP eCLIP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 MSMO1Q15800 293 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 C4orf17Q53FE4 359 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SLC35D3Q5M8T2 416 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CLEC12AQ5QGZ9 265 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SLC18B1Q6NT16 456 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 PARGQ86W56 976 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CERKQ8TCT0 537 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 GPX8Q8TED1 209 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 UBXN10Q96LJ8 280 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 C12orf42Q96LP6 360 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SORCS2Q96PQ0 1159 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 MVB12BQ9H7P6 319 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 NDRG2Q9UN36 371 aaKnown RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CORINQ9Y5Q5 1042 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 GRIN3BO60391 1043 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 KCNJ13O60928 360 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SOX14O95416 240 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MT-CYBP00156 380 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF273Q14593 569 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM244Q5VVB8 128 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 AGTRAPQ6RW13 159 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 C5orf34Q96MH7 638 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF582Q96NG8 517 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 UHRF2Q96PU4 802 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SLC22A12Q96S37 553 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 NMNAT2Q9BZQ4 307 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MOB1AQ9H8S9 216 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PIGVQ9NUD9 493 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 GRHPRQ9UBQ7 328 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SLC6A14Q9UN76 642 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TRAV18A0A075B6X5 111 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 BLACEA4D250 179 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 GLTPD2A6NH11 291 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 CPSF4LA6NMK7 179 aaKnown RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TRAF3IP2O43734 574 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 FXYD6P3P58550 94 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MGAT3Q09327 533 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PRAMEF14Q5SWL7 426 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 KIAA0319Q5VV43 1072 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 APOOLQ6UXV4 268 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF705AQ6ZN79 300 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MDGA2Q7Z553 956 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 CBARPQ8N350 705 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TEX19Q8NA77 164 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 OR52P1PQ8NH57 321 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 OLIG1Q8TAK6 271 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PROKR1Q8TCW9 393 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ST8SIA2Q92186 375 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TBL1XR1Q9BZK7 514 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 B3GAT2Q9NPZ5 323 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 RCE1Q9Y256 329 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 COL2A1P02458 1487 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 A0A0A6YYJ9 748 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 A6NIZ1 184 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SCGB1D2O95969 90 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 KCNJ3P48549 501 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 DHPSP49366 369 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 RAP1BP61224 184 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 AGBL4Q5VU57 503 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 KANSL1Q7Z3B3 1105 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SPRYD4Q8WW59 207 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 HOXB13Q92826 284 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF426Q9BUY5 554 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 EBPLQ9BY08 206 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ABHD16BQ9H3Z7 469 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM212A6NML5 194 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PNMTP11086 282 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 CPEP16870 476 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms