RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 HERVK_113P63132 956 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 ERVK-8P63133 956 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 GALK2Q01415 458 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 NME3Q13232 169 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 TSTA3Q13630 321 aaPredicted RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 SYPL1Q16563 259 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 PAGE3Q5JUK9 113 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 CASC1Q6TDU7 716 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 UNQ9370/PRO34162Q6UXP9 181 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 LEMD2Q8NC56 503 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 TRUB1Q8WWH5 349 aaKnown RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 RSPH1Q8WYR4 309 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 RPUSD4Q96CM3 377 aaKnown RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 TMEM121Q9BTD3 319 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 ERVK-6Q9BXR3 956 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 RBM28Q9NW13 759 aaKnown RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 PAK1IP1Q9NWT1 392 aaPredicted RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 RBAKQ9NYW8 714 aaPredicted RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 TBX21Q9UL17 535 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 PRPF19Q9UMS4 504 aaKnown RBP2.07□□□□□ -2.08
CD44-239ENST00000639002 NEUROG3Q9Y4Z2 214 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 GMPPBQ9Y5P6 360 aa2.07□□□□□ -2.08
CD44-239ENST00000639002 LOC100131303A0A0U1RQF7 123 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 GJE1A6NN92 205 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 TRIM3O75382 744 aaPredicted RBP2.06□□□□□ -2.08
CD44-239ENST00000639002 IGKV1-17P01599 117 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 HMOX1P09601 288 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 ADSSP30520 456 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 CASP3P42574 277 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 CSNK1DP48730 415 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 SSTP61278 116 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 MAP2K1Q02750 393 aaPredicted RBP2.06□□□□□ -2.08
CD44-239ENST00000639002 PPP1R8Q12972 351 aaKnown RBP2.06□□□□□ -2.08
CD44-239ENST00000639002 CARTPTQ16568 116 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 TOR1AIP1Q5JTV8 583 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 ETFRF1Q6IPR1 90 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 CYS1Q717R9 158 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 P4HA3Q7Z4N8 544 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 ABHD12BQ7Z5M8 362 aaPredicted RBP2.06□□□□□ -2.08
CD44-239ENST00000639002 KRTAP13-1Q8IUC0 172 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 CERS5Q8N5B7 392 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 PTP4A1Q93096 173 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 SNX21Q969T3 373 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 SLC25A36Q96CQ1 311 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 NAP1L3Q99457 506 aaPredicted RBP2.06□□□□□ -2.08
CD44-239ENST00000639002 NACA2Q9H009 215 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 COG4Q9H9E3 785 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 DCDC2Q9UHG0 476 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 MAB21L2Q9Y586 359 aa2.06□□□□□ -2.08
CD44-239ENST00000639002 DHX29Q7Z478 1369 aaKnown RBP2.06□□□□□ -2.08
CD44-239ENST00000639002 TMEM150BA6NC51 233 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 PES1O00541 588 aaKnown RBP2.05□□□□□ -2.08
CD44-239ENST00000639002 FAM189A1O60320 539 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 KERAO60938 352 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 HMMRO75330 724 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 GOSR1O95249 250 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 XRCC1P18887 633 aaPredicted RBP2.05□□□□□ -2.08
CD44-239ENST00000639002 MNAT1P51948 309 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 HNRNPFP52597 415 aaKnown RBP2.05□□□□□ -2.08
CD44-239ENST00000639002 GFPT1Q06210 699 aaPredicted RBP2.05□□□□□ -2.08
CD44-239ENST00000639002 ST3GAL3Q11203 375 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 WASHC5Q12768 1159 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 RPA4Q13156 261 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 CBX3Q13185 183 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 HFEQ30201 348 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 ACP7Q6ZNF0 438 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 C1orf186Q6ZWK4 172 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 ARMCX2Q7L311 632 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 ZNF596Q8TC21 504 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 KRT35Q92764 455 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 CCDC47Q96A33 483 aaKnown RBP2.05□□□□□ -2.08
CD44-239ENST00000639002 TBC1D31Q96DN5 1066 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 COQ7Q99807 217 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 SRXN1Q9BYN0 137 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 DDX47Q9H0S4 455 aaKnown RBP2.05□□□□□ -2.08
CD44-239ENST00000639002 SIRPDQ9H106 197 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 DBNDD1Q9H9R9 158 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 GALPQ9UBC7 116 aa2.05□□□□□ -2.08
CD44-239ENST00000639002 DDX39AO00148 427 aaKnown RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 CASKO14936 926 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 RETP07949 1114 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 STMN1P16949 149 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 IGFBP3P17936 291 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 COL5A1P20908 1838 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 DLSTP36957 453 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 HTR5AP47898 357 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 NOVA1P51513 510 aaKnown RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 SLAQ13239 276 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 TFDP1Q14186 410 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 GGTLC2Q14390 218 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 NSDHLQ15738 373 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 LINC00483Q53H64 154 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 WDR74Q6RFH5 385 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 ZNF695Q8IW36 515 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 MTURNQ8N3F0 131 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 ZNF713Q8N859 430 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 NEK11Q8NG66 645 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 DNAJA4Q8WW22 397 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 FAM210BQ96KR6 192 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 ZNF560Q96MR9 790 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms