RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 HRASLS2Q9NWW9 162 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF256Q9Y2P7 627 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 USP3Q9Y6I4 520 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GLI2P10070 1586 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 IQGAP1P46940 1657 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ABCA6Q8N139 1617 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GRXCR1A8MXD5 290 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 H3BVH4 76 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 PRAMEF2O60811 474 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 POU2F2P09086 479 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CRISP2P16562 243 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TRHRP34981 398 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MRPS34P82930 218 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SERTAD2Q14140 314 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 RNLSQ5VYX0 342 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CEACAM19Q7Z692 300 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SERPINA11Q86U17 422 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 LINC00469Q8N7U9 141 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 DNAJC18Q9H819 358 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 C1orf123Q9NWV4 160 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 UPK3BL1B0FP48 263 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF732B4DXR9 585 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 UPK3BL2E5RIL1 263 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 PFKMP08237 780 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 RPS23P62266 143 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SUMO1P63165 101 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 THEM4Q5T1C6 240 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MEX3BQ6ZN04 569 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GRAMD2AQ8IUY3 354 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MS4A15Q8N5U1 240 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SLC35G3Q8N808 338 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 KREMEN2Q8NCW0 462 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CD200R1Q8TD46 325 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SLC39A7Q92504 469 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 PYURFQ96I23 114 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 NIPAL2Q9H841 368 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ACKR4Q9NPB9 350 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CPNE7Q9UBL6 633 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 NAV1Q8NEY1 1877 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 KCNU1A8MYU2 1149 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MATN3O15232 486 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CYTIPO60759 359 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 HLA-EP13747 358 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 POU3F2P20265 443 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GABRA3P34903 492 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TNFSF9P41273 254 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GNB2P62879 340 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 IL13RA1P78552 427 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MEF2AQ02078 507 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MICAQ29983 383 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF404Q494X3 552 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ANKRD22Q5VYY1 191 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CMTM4Q8IZR5 234 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CYP2W1Q8TAV3 490 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF599Q96NL3 588 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 OR5B2Q96R09 309 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TMEM208Q9BTX3 173 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TSSK6Q9BXA6 273 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SLC22A11Q9NSA0 550 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 RYDENQ9NUL5 291 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TCAF1Q9Y4C2 921 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 LMO7Q8WWI1 1683 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 NCANO14594 1321 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 PREX2Q70Z35 1606 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GLOD5A6NK44 160 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SCO2O43819 266 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 DPM1O60762 260 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TUSC2O75896 110 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 GOT2P00505 430 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SNRNP70P08621 437 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CD48P09326 243 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ENGP17813 658 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 NELFEP18615 380 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 HTR5AP47898 357 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CHRNEQ04844 493 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 SNTB2Q13425 540 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ALYREFQ86V81 257 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 WDR31Q8NA23 367 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 HYLS1Q96M11 299 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ACO2Q99798 780 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MRPL13Q9BYD1 178 aaKnown RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CNTD2Q9H8S5 307 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ADAMTS6Q9UKP5 1117 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 FREM1Q5H8C1 2179 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 AHSGP02765 367 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 CHRM5P08912 532 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-212ENST00000636194 HNF1AP20823 631 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 PRSS3P35030 304 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 MARCKSL1P49006 195 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 PRSS12P56730 875 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TAS2R45P59539 299 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ARSIQ5FYB1 569 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 KIAA1211LQ6NV74 962 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 ADAM5Q6NVV9 412 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 DPY19L2P1Q6NXN4 242 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 OGFOD3Q6PK18 319 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 KCTD20Q7Z5Y7 419 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 KLBQ86Z14 1044 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 TMEM185AQ8NFB2 350 aa5.7□□□□□ -1.5
SCN1A-212ENST00000636194 OR9A1PQ8NGU1 263 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms