RNA–Protein interactions for RNA: ENST00000628078.2

TCF4-262, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-262	ENST00000628078	NDUFS7	O75251	213 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ADA	P00813	363 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	SOD3	P08294	240 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	OCRL	Q01968	901 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ZNF117	Q03924	483 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	LASP1	Q14847	261 aa	Known RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	TMEM176B	Q3YBM2	270 aa	Predicted RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	TMEM201	Q5SNT2	666 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	PDSS1	Q5T2R2	415 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	C10orf107	Q8IVU9	208 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ZNF614	Q8N883	585 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	OR7A2P	Q8NGA2	310 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ZFP28	Q8NHY6	868 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	FBXO27	Q8NI29	283 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	AGR3	Q8TD06	166 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	HOXB13	Q92826	284 aa	Predicted RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ZBTB8A	Q96BR9	441 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ZBED6CL	Q96FA7	236 aa	Predicted RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	REXO5	Q96IC2	774 aa	Known RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	TACO1	Q9BSH4	297 aa	Known RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	TMEM204	Q9BSN7	226 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	ANKZF1	Q9H8Y5	726 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	OXSM	Q9NWU1	459 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	WBP11	Q9Y2W2	641 aa	Known RBP	12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	HIVEP2	P31629	2446 aa		12.02	□□□□□ -0.49
TCF4-262	ENST00000628078	NUP214	P35658	2090 aa	Predicted RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078		A0A1W2PNR3	127 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	TTC36	A6NLP5	189 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	ZNF195	O14628	629 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	AZIN1	O14977	448 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	GCM2	O75603	506 aa	Predicted RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	HMGN2	P05204	90 aa	Known RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	LINGO3	P0C6S8	592 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	ENPP1	P22413	925 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	IL32	P24001	234 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	ACVR1B	P36896	505 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	DNAJB13	P59910	316 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	RPS4X	P62701	263 aa	Known RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	POU6F2	P78424	691 aa	Predicted RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	KRTAP1-1	Q07627	177 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	TAB1	Q15750	504 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	GTF2IRD2B	Q6EKJ0	949 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	CDC73	Q6P1J9	531 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	OLIG3	Q7RTU3	272 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	GTF2IRD2	Q86UP8	949 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	TRABD2A	Q86V40	505 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	DDIAS	Q8IXT1	998 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	C4orf33	Q8N1A6	199 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	OR6Y1	Q8NGX8	325 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	ACTRT2	Q8TDY3	377 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	GTPBP3	Q969Y2	492 aa	Known RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	FAM120B	Q96EK7	910 aa	Known RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	DNAJA3	Q96EY1	480 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	MS4A4E	Q96PG1	132 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	GATA5	Q9BWX5	397 aa	Predicted RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	TXLNGY	Q9BZA5	131 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	FANCF	Q9NPI8	374 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	GLRX2	Q9NS18	164 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	SIRT3	Q9NTG7	399 aa	Predicted RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	ZCCHC3	Q9NUD5	404 aa	Known RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	PAQR5	Q9NXK6	330 aa	Predicted RBP	12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	PRSS50	Q9UI38	385 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	LIPT1	Q9Y234	373 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	RNF115	Q9Y4L5	304 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	CR1	P17927	2039 aa		12.01	□□□□□ -0.49
TCF4-262	ENST00000628078	DNHD1	Q96M86	4753 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	CHD3	Q12873	2000 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	NPIPB8	E9PQR5	432 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	GTPBP1	O00178	669 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	COPE	O14579	308 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	RAMP1	O60894	148 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	CRLF1	O75462	422 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	CHRNG	P07510	517 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	CD3E	P07766	207 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	BCKDHA	P12694	445 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	PSMB1	P20618	241 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	EDNRA	P25101	427 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	SERPINB4	P48594	390 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	CCT5	P48643	541 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	STK11	Q15831	433 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	ZNF239	Q16600	458 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	CCDC153	Q494R4	210 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	NCMAP	Q5T1S8	102 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	SFRP5	Q5T4F7	317 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	LIPM	Q5VYY2	423 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	ADAM5	Q6NVV9	412 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	TFAP2E	Q6VUC0	442 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	CXXC5	Q7LFL8	322 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	GABRG1	Q8N1C3	465 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	STEAP2	Q8NFT2	490 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	KBTBD8	Q8NFY9	601 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	OR2W6P	Q8NHA6	318 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	EPS8L3	Q8TE67	593 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	SMAP2	Q8WU79	429 aa	Predicted RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	UBLCP1	Q8WVY7	318 aa	Predicted RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	CCT7	Q99832	543 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	REPIN1	Q9BWE0	567 aa	Known RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	BTBD2	Q9BX70	525 aa		12	□□□□□ -0.49
TCF4-262	ENST00000628078	GDF2	Q9UK05	429 aa	Predicted RBP	12	□□□□□ -0.49
TCF4-262	ENST00000628078	DNAJC15	Q9Y5T4	150 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms