RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 GTPBP8Q8N3Z3 284 aaPredicted RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 C9orf106Q8NAJ2 232 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 CHDHQ8NE62 594 aaPredicted RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 OR5M1Q8NGP8 315 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 RFWD2Q8NHY2 731 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 MIPOL1Q8TD10 442 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 OIT3Q8WWZ8 545 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 C7orf26Q96N11 449 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 CCDC115Q96NT0 180 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 SDF2Q99470 211 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 PINK1Q9BXM7 581 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 RTN4RQ9BZR6 473 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 TRIM8Q9BZR9 551 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 OR51I1Q9H343 314 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 MCCC2Q9HCC0 563 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 FANCFQ9NPI8 374 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 NPDC1Q9NQX5 325 aaPredicted RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 MED17Q9NVC6 651 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 FBXO34Q9NWN3 711 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 ZIM2Q9NZV7 527 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 MCTS1Q9ULC4 181 aaKnown RBP12.77□□□□□ -0.37
LIG1-218ENST00000599322 EDARQ9UNE0 448 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 LIPT1Q9Y234 373 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 ZNF175Q9Y473 711 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 GPR45Q9Y5Y3 372 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 USH1CQ9Y6N9 552 aa12.77□□□□□ -0.37
LIG1-218ENST00000599322 HCFC1P51610 2035 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 C7orf72A4D263 438 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 ANKRD28O15084 1053 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 ZNF264O43296 627 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 CYP7B1O75881 506 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 PLGP00747 810 aaPredicted RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 ALDOCP09972 364 aaKnown RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 PABPC4LP0CB38 370 aaKnown RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 OR12D1P0DN82 309 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 UBL4AP11441 157 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 EIF1AXP47813 144 aaKnown RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 CCR4P51679 360 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 AGFG1P52594 562 aaKnown RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 CLDN15P56746 228 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 RAC1P63000 192 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 PPP2R2AP63151 447 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 CBFBQ13951 182 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 FBXL19-AS1Q494R0 122 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 TNFAIP8L2Q6P589 184 aaPredicted RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 EIF3MQ7L2H7 374 aaKnown RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 ZAR1Q86SH2 424 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 TMEM200AQ86VY9 491 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 CNEP1R1Q8N9A8 125 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 NAXEQ8NCW5 288 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 TMEM234Q8WY98 164 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 NEURL3Q96EH8 262 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 ITCHQ96J02 903 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 RBM24Q9BX46 236 aaKnown RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 NMUR2Q9GZQ4 415 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 CLCF1Q9UBD9 225 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 PACSIN3Q9UKS6 424 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 CARD8Q9Y2G2 431 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 WDR45Q9Y484 360 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 GPC6Q9Y625 555 aaPredicted RBP12.76□□□□□ -0.37
LIG1-218ENST00000599322 TACC2O95359 2948 aa12.76□□□□□ -0.37
LIG1-218ENST00000599322 NPIPA5A0A0B4J1W7 369 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 SERINC4A6NH21 518 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 TUBAL3A6NHL2 446 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 C17orf51A8MQB3 221 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 NPIPA7E9PJI5 369 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 CASKO14936 926 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 SMNDC1O75940 238 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIG1-218ENST00000599322 F8P00451 2351 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 CSTAP01040 98 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 NPIPA8P0DM63 369 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 IGFBP2P18065 325 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ADH6P28332 368 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 MAGEA8P43361 318 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 CTBP2P56545 445 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 IRX1P78414 480 aaPredicted RBP12.75□□□□□ -0.37
LIG1-218ENST00000599322 SLC9B1Q4ZJI4 515 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 SAXO2Q658L1 398 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ESPNLQ6ZVH7 1005 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 MED13LQ71F56 2210 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ADGRE4PQ86SQ3 457 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 GCNT2Q8N0V5 402 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 CLEC4FQ8N1N0 589 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ACBD4Q8NC06 268 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 OR5W2Q8NH69 310 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 FAM222BQ8WU58 562 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ROPN1LQ96C74 230 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 MAELQ96JY0 434 aaKnown RBP12.75□□□□□ -0.37
LIG1-218ENST00000599322 LURAP1Q96LR2 239 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 RNF145Q96MT1 663 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 TREX2Q9BQ50 279 aaPredicted RBP12.75□□□□□ -0.37
LIG1-218ENST00000599322 SLC39A3Q9BRY0 314 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 TCF7L2Q9NQB0 619 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 SERINC1Q9NRX5 453 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.75□□□□□ -0.37
LIG1-218ENST00000599322 NDRG3Q9UGV2 375 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 MKLN1Q9UL63 735 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 SLC35A3Q9Y2D2 325 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 KCNE3Q9Y6H6 103 aa12.75□□□□□ -0.37
LIG1-218ENST00000599322 ARHGAP21Q5T5U3 1957 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms