RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CR1P17927 2039 aa12.6□□□□□ -0.39
SHKBP1-218ENST00000598907 DEFB108AA8MXU0 73 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 HRKO00198 91 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 SPRY1O43609 319 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 RRP9O43818 475 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 CD5LO43866 347 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 BCAS2O75934 225 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 ANP32DO95626 131 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 TNNI3P19429 210 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 SLC6A2P23975 617 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 OPRM1P35372 400 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 MVDP53602 400 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 KCNJ2P63252 427 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 ZNF267Q14586 743 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 EXOSC6Q5RKV6 272 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 PRAMEF20Q5VT98 475 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 SAXO2Q658L1 398 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 NANOGP8Q6NSW7 305 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 ZNF615Q8N8J6 731 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 RBM15BQ8NDT2 890 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 OR7G1Q8NGA0 311 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 DOK4Q8TEW6 326 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 HOXB13Q92826 284 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 DAZLQ92904 295 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 NEURL3Q96EH8 262 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 JSRP1Q96MG2 331 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 CPPED1Q9BRF8 314 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 SLC35A5Q9BS91 424 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 ANKRA2Q9H9E1 313 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 NANOGQ9H9S0 305 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 TPT1P8Q9HAU6 139 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 C3orf14Q9HBI5 128 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 GPATCH2Q9NW75 528 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 KLHL28Q9NXS3 571 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 NDRG3Q9UGV2 375 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 ERVK-19Q9WJR5 959 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 PCDHGB3Q9Y5G1 929 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 CLCA3PQ9Y6N3 262 aa12.59□□□□□ -0.39
SHKBP1-218ENST00000598907 RAI1Q7Z5J4 1906 aaPredicted RBP12.58□□□□□ -0.39
SHKBP1-218ENST00000598907 ABCA1O95477 2261 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 RNF103-CHMP3A0A140T963 221 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 A8MV72 311 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 AHRRA9YTQ3 701 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 CLIC1O00299 241 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 TMIGD3P0DMS9 266 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 GPX2P18283 190 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 SSTR4P31391 388 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 MAP3K8P41279 467 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 EMDP50402 254 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC37A1P57057 533 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 PRR5P85299 388 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC25A3Q00325 362 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 FOXF2Q12947 444 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 CLEC12BQ2HXU8 276 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 NSUN5P2Q63ZY6 315 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 DNAJC14Q6Y2X3 702 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 CCDC121Q6ZUS5 278 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 C6orf120Q7Z4R8 191 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 PGAM4Q8N0Y7 254 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 CLEC4FQ8N1N0 589 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 ZNF321PQ8N8H1 164 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 NUP43Q8NFH3 380 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 OR8J3Q8NGG0 315 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 OR56A1Q8NGH5 318 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 OR5AK3PQ8NH89 298 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 MIPOL1Q8TD10 442 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC2A12Q8TD20 617 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 TMEM171Q8WVE6 324 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 AURKBQ96GD4 344 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 ART5Q96L15 291 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC39A3Q9BRY0 314 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 IKZF5Q9H5V7 419 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 ZCCHC3Q9NUD5 404 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 NDE1Q9NXR1 346 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 BOKQ9UMX3 212 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 WIF1Q9Y5W5 379 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 SNX8Q9Y5X2 465 aa12.58□□□□□ -0.4
SHKBP1-218ENST00000598907 LRRC3CA6NJW4 275 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 SNPHO15079 494 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 DYRK3O43781 588 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 ZNF354AO60765 605 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 KRT75O95678 551 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 PPIBP23284 216 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 GDF1P27539 372 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 SOAT1P35610 550 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 MAGEA8P43361 318 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 PSME3P61289 254 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 NCALDP61601 193 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 CRYZQ08257 329 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 SELPLGQ14242 412 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 EXOSC7Q15024 291 aaKnown RBP12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 ZSCAN26Q16670 478 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 C6orf163Q5TEZ5 329 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 ZCCHC12Q6PEW1 402 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 BHLHB9Q6PI77 547 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 C16orf89Q6UX73 402 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 PLEKHM3Q6ZWE6 761 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 ARPINQ7Z6K5 226 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 SLC15A3Q8IY34 581 aa12.57□□□□□ -0.4
SHKBP1-218ENST00000598907 ZNF441Q8N8Z8 693 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms