RNA–Protein interactions for RNA: ENST00000589933.1

TMC6-213, Transcript of transmembrane channel like 6, human

TSL 3

Gene TMC6, Length 580 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMC6-213	ENST00000589933	SCAMP2	O15127	329 aa	Known RBP	18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	TMCC2	O75069	709 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	OPN1LW	P04000	364 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	HEXA	P06865	529 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	ELK4	P28324	431 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	ADH6	P28332	368 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	CCT3	P49368	545 aa	Known RBP	18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	TP53BP2	Q13625	1128 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	RNPS1	Q15287	305 aa	Known RBP	18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	ATP6AP1L	Q52LC2	224 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	CCNJ	Q5T5M9	372 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	BHLHB9	Q6PI77	547 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933		Q71RC1	249 aa	Predicted RBP	18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	KRTAP1-3	Q8IUG1	177 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	TMEM171	Q8WVE6	324 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	CPNE4	Q96A23	557 aa	Predicted RBP	18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	MOAP1	Q96BY2	351 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	PERP	Q96FX8	193 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	ADGRG7	Q96K78	797 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933		Q96MF0	132 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	ACTRT3	Q9BYD9	372 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	CXorf56	Q9H5V9	222 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933	TMEM185B	Q9H7F4	350 aa		18.87	■□□□□ 0.61
TMC6-213	ENST00000589933		A0A0J9YW62	118 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	PIP5K1B	O14986	540 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	EFNA1	P20827	205 aa	Predicted RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	ALDH3A1	P30838	453 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	SERPINB5	P36952	375 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	SUMO3	P55854	103 aa	Predicted RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	CTU2	Q2VPK5	515 aa	Known RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	ARL13A	Q5H913	290 aa	Predicted RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	CDC73	Q6P1J9	531 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	STAC2	Q6ZMT1	411 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	STEAP2	Q8NFT2	490 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	OR5P2	Q8WZ92	322 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	CDS1	Q92903	461 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	SMR3A	Q99954	134 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	TACO1	Q9BSH4	297 aa	Known RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	HDHD5	Q9BXW7	423 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	NGB	Q9NPG2	151 aa		18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	GPC6	Q9Y625	555 aa	Predicted RBP	18.86	■□□□□ 0.61
TMC6-213	ENST00000589933	CFLAR	O15519	480 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	PEX11A	O75192	247 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	PSMA4	P25789	261 aa	Known RBP	18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	SFTPD	P35247	375 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	P2RX1	P51575	399 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	IFFO1	Q0D2I5	559 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	ZNF704	Q6ZNC4	412 aa	Predicted RBP	18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	ZAR1	Q86SH2	424 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	WFDC8	Q8IUA0	241 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	OR7A2P	Q8NGA2	310 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	OTUB1	Q96FW1	271 aa	Predicted RBP	18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	MARK4	Q96L34	752 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	HS3ST6	Q96QI5	342 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	ACTR6	Q9GZN1	396 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933	C12orf49	Q9H741	205 aa		18.85	■□□□□ 0.61
TMC6-213	ENST00000589933		H7C1Q1	480 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	CHRNG	P07510	517 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	LINGO3	P0C6S8	592 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	PSMB1	P20618	241 aa	Known RBP	18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	PRPS1L1	P21108	318 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	AGTR1	P30556	359 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	MAD2L1	Q13257	205 aa	Predicted RBP	18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	BANP	Q8N9N5	519 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	FNDC5	Q8NAU1	212 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	AGR3	Q8TD06	166 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	SFXN5	Q8TD22	340 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	PLPPR2	Q96GM1	343 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	COX4I2	Q96KJ9	171 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	GSX2	Q9BZM3	304 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	GP6	Q9HCN6	339 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	SIRT3	Q9NTG7	399 aa	Predicted RBP	18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	FBXO34	Q9NWN3	711 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	ROS1	P08922	2347 aa		18.84	■□□□□ 0.61
TMC6-213	ENST00000589933	NIPBL	Q6KC79	2804 aa	eCLIP	18.83	■□□□□ 0.61
TMC6-213	ENST00000589933	TMEM233	B4DJY2	109 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	ZNF195	O14628	629 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	SLU7	O95391	586 aa	Known RBP	18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	LAMP1	P11279	417 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	ATP12A	P54707	1039 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	ZNF117	Q03924	483 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	FOXF1	Q12946	379 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	CD226	Q15762	336 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	UGT3A2	Q3SY77	523 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	EXOSC6	Q5RKV6	272 aa	Known RBP	18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	DCST2	Q5T1A1	773 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	SLC43A2	Q8N370	569 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	ZNF614	Q8N883	585 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	POC1B	Q8TC44	478 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	NUDT8	Q8WV74	236 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	USB1	Q9BQ65	265 aa	Known RBP	18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	ACTL7B	Q9Y614	415 aa		18.83	■□□□□ 0.6
TMC6-213	ENST00000589933	SMAD7	O15105	426 aa	Known RBP	18.82	■□□□□ 0.6
TMC6-213	ENST00000589933	KLF4	O43474	513 aa		18.82	■□□□□ 0.6
TMC6-213	ENST00000589933	PRKD3	O94806	890 aa		18.82	■□□□□ 0.6
TMC6-213	ENST00000589933	THBD	P07204	575 aa		18.82	■□□□□ 0.6
TMC6-213	ENST00000589933	IL32	P24001	234 aa		18.82	■□□□□ 0.6
TMC6-213	ENST00000589933	LOX	P28300	417 aa	Predicted RBP	18.82	■□□□□ 0.6
TMC6-213	ENST00000589933	SLC7A1	P30825	629 aa		18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms