RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 A0A0B4J2E0 115 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 IGHV5-10-1A0A0J9YXX1 117 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 A0A1B0GX12 115 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 A0A1W2PQM1 296 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 SERINC4A6NH21 518 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 OR6C76A6NM76 312 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 ARHGAP33O14559 1287 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 SLC22A1O15245 554 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 GABARAPO95166 117 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 IL33O95760 270 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 HMGN1P05114 100 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 STSP08842 583 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 CKMT1AP12532 417 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 C21orf33P30042 268 aaPredicted RBP13.09□□□□□ -0.31
LIG3-205ENST00000585941 RNLSQ5VYX0 342 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 ACSM5Q6NUN0 579 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 ZNF620Q6ZNG0 422 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 TMPRSS11FQ6ZWK6 438 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 P2RY8Q86VZ1 359 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 TMEM163Q8TC26 289 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 TSLPQ969D9 159 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 LCORQ96JN0 433 aaPredicted RBP13.09□□□□□ -0.31
LIG3-205ENST00000585941 OR8D2Q9GZM6 311 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 NAA50Q9GZZ1 169 aaKnown RBP13.09□□□□□ -0.31
LIG3-205ENST00000585941 RACGAP1Q9H0H5 632 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 EGLN3Q9H6Z9 239 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 LIN28AQ9H9Z2 209 aaKnown RBP13.09□□□□□ -0.31
LIG3-205ENST00000585941 TBC1D23Q9NUY8 699 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 SELENONQ9NZV5 590 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 RPS6KB2Q9UBS0 482 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 ZNF223Q9UK11 482 aaPredicted RBP13.09□□□□□ -0.31
LIG3-205ENST00000585941 HTR3EA5X5Y0 456 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 UNC119BA6NIH7 251 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 TLX2O43763 284 aaPredicted RBP13.08□□□□□ -0.31
LIG3-205ENST00000585941 RCBTB2O95199 551 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 DDAH2O95865 285 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 CSTAP01040 98 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 ACAA2P42765 397 aaKnown RBP13.08□□□□□ -0.31
LIG3-205ENST00000585941 GPR4P46093 362 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 CTBP2P56545 445 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 PLAURQ03405 335 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 OCA2Q04671 838 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 NFATC3Q12968 1075 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 ZNF528Q3MIS6 628 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 VWA2Q5GFL6 755 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 PRAMEF17Q5VTA0 474 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 C1orf189Q5VU69 101 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 HLA-DQA1Q5Y7H0 255 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 ULK3Q6PHR2 472 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 SLC16A12Q6ZSM3 486 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 ZNF367Q7RTV3 350 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 TMPRSS9Q7Z410 1059 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 SLC43A2Q8N370 569 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 IQCF1Q8N6M8 205 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 BRIX1Q8TDN6 353 aaKnown RBP13.08□□□□□ -0.31
LIG3-205ENST00000585941 ZNF721Q8TF20 911 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 OR6C1Q96RD1 312 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 CCNL2Q96S94 520 aaPredicted RBP13.08□□□□□ -0.31
LIG3-205ENST00000585941 TSSK6Q9BXA6 273 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 PLA2G12AQ9BZM1 189 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 VN1R1Q9GZP7 353 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 MKL2Q9ULH7 1088 aa13.08□□□□□ -0.31
LIG3-205ENST00000585941 FER1L5A0AVI2 2057 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 A0A1B0GWA3 101 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 TMEM221A6NGB7 291 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 M0R296 226 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 PRKYO43930 277 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 ONECUT2O95948 504 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 DBTP11182 482 aaKnown RBP13.08□□□□□ -0.32
LIG3-205ENST00000585941 HPGDP15428 266 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 ENDOUP21128 410 aaKnown RBP13.08□□□□□ -0.32
LIG3-205ENST00000585941 DAB2P98082 770 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 TRA2AQ13595 282 aaKnown RBP eCLIP13.08□□□□□ -0.32
LIG3-205ENST00000585941 KLHL22Q53GT1 634 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 KLHL26Q53HC5 615 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 SYT14P1Q58G82 188 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 TRIM61Q5EBN2 209 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 BMP8AQ7Z5Y6 402 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 OR2T33Q8NG76 320 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 OR52L1Q8NGH7 329 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 OR8D4Q8NGM9 314 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 RNF217Q8TC41 542 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 IFI44Q8TCB0 444 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 DNAJA4Q8WW22 397 aaPredicted RBP13.08□□□□□ -0.32
LIG3-205ENST00000585941 RFKQ969G6 155 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 TMEM80Q96HE8 168 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 PLEKHA8Q96JA3 519 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 CCDC74BQ96LY2 380 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 DSN1Q9H410 356 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 FSCN3Q9NQT6 498 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 MRPS18AQ9NVS2 196 aaKnown RBP13.08□□□□□ -0.32
LIG3-205ENST00000585941 SIDT1Q9NXL6 827 aaKnown RBP13.08□□□□□ -0.32
LIG3-205ENST00000585941 DNAJC27Q9NZQ0 273 aa13.08□□□□□ -0.32
LIG3-205ENST00000585941 ZDBF2Q9HCK1 2354 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 C2orf92A0A1B0GVN3 265 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 A0A1W2PPW3 197 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 A8MUA0 341 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 TO15178 435 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 PIP5K1CO60331 668 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 BCL10O95999 233 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms