RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SRRQ9GZT4 340 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 MIXL1Q9H2W2 232 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 ABCB9Q9NP78 766 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 SIDT1Q9NXL6 827 aaKnown RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 CLDND1Q9NY35 253 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 H2AFY2Q9P0M6 372 aaPredicted RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 CD207Q9UJ71 328 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 MMP17Q9ULZ9 603 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 CLCA2Q9UQC9 943 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 DNAH14Q0VDD8 3507 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 SPTBN5Q9NRC6 3674 aaKnown RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 SOCS6O14544 535 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 BRINP1O60477 761 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 MAKP20794 623 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 GABRA3P34903 492 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 LTBRP36941 435 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 TPTEP56180 551 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 VSX2P58304 361 aaPredicted RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 PPP1CAP62136 330 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 POU6F2P78424 691 aaPredicted RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 MRPL28Q13084 256 aaKnown RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 BAK1Q16611 211 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 GLYR1Q49A26 553 aaPredicted RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 KLHL36Q8N4N3 616 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 ARIH2OSQ8N7S6 290 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 ZFP41Q8N8Y5 198 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 FAM181AQ8N9Y4 354 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 SYT14Q8NB59 555 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 OR52N1Q8NH53 320 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 PFN4Q8NHR9 129 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 CHAC2Q8WUX2 184 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 HMGB4Q8WW32 186 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 HS6ST2Q96MM7 605 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 SECISBP2Q96T21 854 aaKnown RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 CD180Q99467 661 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 FN3KQ9H479 309 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 POLE3Q9NRF9 147 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 STARD5Q9NSY2 213 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 C20orf141Q9NUB4 165 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 USP36Q9P275 1121 aaKnown RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 A0A1W2PQL4 384 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 GXYLT2A0PJZ3 443 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 OR5K3A6NET4 321 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 FAM183AA6NL82 134 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 SGK494L7N484 410 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 BHLHE40O14503 412 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 CHST10O43529 356 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 HCRTR1O43613 425 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 AKAP8O43823 692 aaKnown RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 SSX4O60224 188 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ATP6V1G1O75348 118 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 NKX2-2O95096 273 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 GAAP10253 952 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 IFI30P13284 250 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 FUT1P19526 365 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 TBXA2RP21731 343 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ATP6V1E1P36543 226 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 RNF144AP50876 292 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 RAB38P57729 211 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 PLAURQ03405 335 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ZNF542PQ5EBM4 170 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 WDR45BQ5MNZ6 344 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ZNF438Q7Z4V0 828 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 LSRQ86X29 649 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 ZNF761Q86XN6 746 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 GID4Q8IVV7 300 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 SIRT6Q8N6T7 355 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 FRMD1Q8N878 549 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 IL17RDQ8NFM7 739 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 FANK1Q8TC84 345 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 HOXB13Q92826 284 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 COQ7Q99807 217 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ENKD1Q9H0I2 346 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 FAM60AQ9NP50 221 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ATP13A2Q9NQ11 1180 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 TNFRSF10DQ9UBN6 386 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 PCDHGB2Q9Y5G2 931 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ARHGEF17Q96PE2 2063 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 SPTY2D1-AS1A0A0U1RR47 76 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 TMEM221A6NGB7 291 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 CBX7O95931 251 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 SLC35E2P0CK97 266 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 BMP7P18075 431 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 DRD5P21918 477 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 TMED10P49755 219 aaKnown RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 FZD5Q13467 585 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 CCINQ13939 588 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 CARTPTQ16568 116 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ZNF791Q3KP31 576 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 ARMC4Q5T2S8 1044 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 DDI2Q5TDH0 399 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 NIPAL3Q6P499 406 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 PLBD1Q6P4A8 553 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ZNF322Q6U7Q0 402 aaPredicted RBP9.34□□□□□ -0.91
VPS53-220ENST00000576149 DGAT2L6Q6ZPD8 337 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 TMPRSS11FQ6ZWK6 438 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 TAF8Q7Z7C8 310 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 ZAR1Q86SH2 424 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 AKAP14Q86UN6 197 aa9.34□□□□□ -0.91
VPS53-220ENST00000576149 OOSP2Q86WS3 158 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms