RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RNF145Q96MT1 663 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 VSTM2LQ96N03 204 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 LYSTQ99698 3801 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 NECAP2Q9NVZ3 263 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 AURKAIP1Q9NWT8 199 aaPredicted RBP13.98□□□□□ -0.17
VPS53-218ENST00000575207 FAM120CQ9NX05 1096 aaKnown RBP13.98□□□□□ -0.17
VPS53-218ENST00000575207 FLRT3Q9NZU0 649 aa13.98□□□□□ -0.17
VPS53-218ENST00000575207 ZNF724A8MTY0 619 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 TAPBPO15533 448 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 SLITRK5O94991 958 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 AHSGP02765 367 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 ZNF37AP17032 561 aaPredicted RBP13.97□□□□□ -0.17
VPS53-218ENST00000575207 EPORP19235 508 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 SHC1P29353 583 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 FEN1P39748 380 aaKnown RBP13.97□□□□□ -0.17
VPS53-218ENST00000575207 SLC1A3P43003 542 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 HSPA7P48741 367 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 TMEM33P57088 247 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 SLC25A3Q00325 362 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 CSTF3Q12996 717 aaKnown RBP13.97□□□□□ -0.17
VPS53-218ENST00000575207 TSNQ15631 228 aaKnown RBP13.97□□□□□ -0.17
VPS53-218ENST00000575207 ELFN2Q5R3F8 820 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 ZNF100Q8IYN0 542 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 CCDC116Q8IYX3 515 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 BCL6BQ8N143 479 aaPredicted RBP13.97□□□□□ -0.17
VPS53-218ENST00000575207 TCAIMQ8N3R3 496 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 HUS1BQ8NHY5 278 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 ZNF75CPQ92670 426 aaPredicted RBP13.97□□□□□ -0.17
VPS53-218ENST00000575207 PLEK2Q9NYT0 353 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 NUP50Q9UKX7 468 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 AMDHD2Q9Y303 409 aa13.97□□□□□ -0.17
VPS53-218ENST00000575207 STK16O75716 305 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 NDUFA7O95182 113 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 GBAP04062 536 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 PCSK2P16519 638 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 ACHEP22303 614 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 CLK3P49761 638 aaKnown RBP13.96□□□□□ -0.17
VPS53-218ENST00000575207 C2orf68Q2NKX9 166 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 SLC9B1Q4ZJI4 515 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 NUDT13Q86X67 352 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 RIBC1Q8N443 379 aaPredicted RBP13.96□□□□□ -0.17
VPS53-218ENST00000575207 C17orf78Q8N4C9 275 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 ESAMQ96AP7 390 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 CALR3Q96L12 384 aaKnown RBP13.96□□□□□ -0.17
VPS53-218ENST00000575207 VWA7Q9Y334 891 aa13.96□□□□□ -0.17
VPS53-218ENST00000575207 C9JVG2 144 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 hCG_2039718K7EN88 272 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 FOXE1O00358 373 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 NME6O75414 186 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 BCAS2O75934 225 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 CLPXO76031 633 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 OPN1MWP04001 364 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 OPN1MW2P0DN77 364 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 OPN1MW3P0DN78 364 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 SFTPDP35247 375 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 PIK3CBP42338 1070 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 TERF1P54274 439 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 MRPS35P82673 323 aaKnown RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 RELBQ01201 579 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 POU3F1Q03052 451 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 TGFBIQ15582 683 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 PLPPR5Q32ZL2 321 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 GALNT5Q7Z7M9 940 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 POC1BQ8TC44 478 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 ZNF775Q96BV0 537 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 ZNF300Q96RE9 604 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 MTERF1Q99551 399 aaKnown RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 MCMBPQ9BTE3 642 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 ZNF665Q9H7R5 613 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 SLC17A5Q9NRA2 495 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 IFNKQ9P0W0 207 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 CTNNAL1Q9UBT7 734 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 CES1P1Q9UKY3 287 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 ICAM5Q9UMF0 924 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 PACSIN2Q9UNF0 486 aaPredicted RBP13.95□□□□□ -0.18
VPS53-218ENST00000575207 OR10H1Q9Y4A9 318 aa13.95□□□□□ -0.18
VPS53-218ENST00000575207 A0A1W2PRB8 838 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 TMEM129A0AVI4 362 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 KLF11O14901 512 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 DEAF1O75398 565 aaPredicted RBP13.94□□□□□ -0.18
VPS53-218ENST00000575207 SEC14L2O76054 403 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 PPP1R3DO95685 299 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 ANGPTL1O95841 491 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 IGHV3-9P01782 118 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 CSNK2A2P19784 350 aaPredicted RBP13.94□□□□□ -0.18
VPS53-218ENST00000575207 COL8A2P25067 703 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 PTX3P26022 381 aaPredicted RBP13.94□□□□□ -0.18
VPS53-218ENST00000575207 GPX6P59796 221 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 TPM4P67936 248 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 LTB4RQ15722 352 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 ZNF311Q5JNZ3 666 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 FAM45BPQ6NSW5 357 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 VHLLQ6RSH7 139 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 SLC44A2Q8IWA5 706 aaPredicted RBP13.94□□□□□ -0.18
VPS53-218ENST00000575207 CDYL2Q8N8U2 506 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 LRRC57Q8N9N7 239 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 FAM45AQ8TCE6 357 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 GBP4Q96PP9 640 aa13.94□□□□□ -0.18
VPS53-218ENST00000575207 GATA5Q9BWX5 397 aaPredicted RBP13.94□□□□□ -0.18
VPS53-218ENST00000575207 COQ10BQ9H8M1 238 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms