RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 CCDC190Q86UF4 302 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 AKAP14Q86UN6 197 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 METTL27Q8N6F8 245 aaPredicted RBP8.15□□□□□ -1.1
LINC00558-201ENST00000569422 MINDY2Q8NBR6 621 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 OR51A7Q8NH64 312 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 C10orf90Q96M02 699 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 SDHCQ99643 169 aaPredicted RBP8.15□□□□□ -1.1
LINC00558-201ENST00000569422 CCDC3Q9BQI4 270 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 AIFM2Q9BRQ8 373 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 NXF2Q9GZY0 626 aaKnown RBP8.15□□□□□ -1.1
LINC00558-201ENST00000569422 C12orf10Q9HB07 376 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 NDUFB11Q9NX14 153 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 LYARQ9NX58 379 aaKnown RBP8.15□□□□□ -1.1
LINC00558-201ENST00000569422 DAPP1Q9UN19 280 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 DIMT1Q9UNQ2 313 aaKnown RBP8.15□□□□□ -1.1
LINC00558-201ENST00000569422 KIAA1549LQ6ZVL6 1849 aa8.15□□□□□ -1.1
LINC00558-201ENST00000569422 HYKKA2RU49 373 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 VSTM5A8MXK1 200 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 ZNF670-ZNF695F2Z2N8 137 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 DVL2O14641 736 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 REM1O75628 298 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 SLITRK5O94991 958 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 CNOT4O95628 575 aaKnown RBP8.15□□□□□ -1.11
LINC00558-201ENST00000569422 SAGP10523 405 aaPredicted RBP8.15□□□□□ -1.11
LINC00558-201ENST00000569422 IFI30P13284 250 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 IL32P24001 234 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 GABRA3P34903 492 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 TNFRSF4P43489 277 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 TPMTP51580 245 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 CCDC85BQ15834 202 aaPredicted RBP8.15□□□□□ -1.11
LINC00558-201ENST00000569422 ALG11Q2TAA5 492 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 FCRL6Q6DN72 434 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 SIGIRRQ6IA17 410 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 TAF8Q7Z7C8 310 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 KLBQ86Z14 1044 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 OR13H1Q8NG92 308 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 ASB15Q8WXK1 588 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 MS4A4EQ96PG1 132 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 SDF2Q99470 211 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 MMP28Q9H239 520 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 C20orf141Q9NUB4 165 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 USP36Q9P275 1121 aaKnown RBP8.15□□□□□ -1.11
LINC00558-201ENST00000569422 LIPT1Q9Y234 373 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 SPTBP11277 2137 aa8.15□□□□□ -1.11
LINC00558-201ENST00000569422 GXYLT2A0PJZ3 443 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ISPDA4D126 451 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 DUXAA6NLW8 204 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ASNA1O43681 348 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 CT62P0C5K7 136 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 CPMP14384 443 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 PRKACAP17612 351 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 FABP5Q01469 135 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ILF3Q12906 894 aaKnown RBP eCLIP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 C21orf62-AS1Q17RA5 79 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 PYDC2Q56P42 97 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 MRPL2Q5T653 305 aaKnown RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 C19orf48Q6RUI8 117 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 PARGQ86W56 976 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 CYB561A3Q8NBI2 242 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ACOT11Q8WXI4 607 aaPredicted RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 UFD1Q92890 307 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 MOAP1Q96BY2 351 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 KCTD7Q96MP8 289 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 TRIM45Q9H8W5 580 aaPredicted RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 MTHFD2LQ9H903 347 aaPredicted RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 EVA1BQ9NVM1 165 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 CALML5Q9NZT1 146 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 KCMF1Q9P0J7 381 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 TESQ9UGI8 421 aaKnown RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 NDRG2Q9UN36 371 aaKnown RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 KIF26AQ9ULI4 1882 aaPredicted RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 MDC1Q14676 2089 aaKnown RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 TRAV27A0A087WT01 109 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 FABP12A6NFH5 140 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 SNTNA6NMZ2 147 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 SLC30A4O14863 429 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 HRO43593 1189 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 RDH16O75452 317 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 SERPINI2O75830 405 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 GYPBP06028 91 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 GSTT2P0CG29 244 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 GSTT2BP0CG30 244 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 LIMS3P0CW19 117 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 LIMS4P0CW20 117 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 HNRNPA2B1P22626 353 aaKnown RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 LRIT3Q3SXY7 679 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 RSBN1Q5VWQ0 802 aaPredicted RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ZAR1Q86SH2 424 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 SPRYD4Q8WW59 207 aaPredicted RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 RLN3Q8WXF3 142 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 SLC22A18Q96BI1 424 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 DMRTB1Q96MA1 342 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 PTCHD1Q96NR3 888 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ARHGDIGQ99819 225 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ZFYVE21Q9BQ24 234 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 SP140LQ9H930 580 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 ISG20L2Q9H9L3 353 aaKnown RBP8.14□□□□□ -1.11
LINC00558-201ENST00000569422 IL21RQ9HBE5 538 aa8.14□□□□□ -1.11
LINC00558-201ENST00000569422 CPNE5Q9HCH3 593 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms