RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 AHCYP23526 432 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 COPB2P35606 906 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 SLC6A8P48029 635 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 VLDLRP98155 873 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 AP1B1Q10567 949 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 TFDP1Q14186 410 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 NSDHLQ15738 373 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 SCYL2Q6P3W7 929 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 LEG1Q6P5S2 330 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 WASH2PQ6VEQ5 465 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 HSD11B1LQ7Z5J1 315 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 TMEM61Q8N0U2 210 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 LINC01561Q8N1V8 128 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 BPIFB2Q8N4F0 458 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 SPC24Q8NBT2 197 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 TRUB1Q8WWH5 349 aaKnown RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 UCN3Q969E3 161 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 EEF2KMTQ96G04 330 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 ELMO2Q96JJ3 720 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 NFKBIZQ9BYH8 718 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 POLR2J2Q9GZM3 115 aaKnown RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 POLR2J3Q9H1A7 115 aaKnown RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 RPAP3Q9H6T3 665 aaPredicted RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 SYTL2Q9HCH5 934 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 NANSQ9NR45 359 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 COMMD8Q9NX08 183 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 BCAP29Q9UHQ4 241 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 PHF11Q9UIL8 331 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 NOL7Q9UMY1 257 aaKnown RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 GMPPBQ9Y5P6 360 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 IGHV1OR15-1A0A075B7D0 117 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 TTC26A0AVF1 554 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 SYCE3A1L190 88 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 TMEM150BA6NC51 233 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 FBLL1A6NHQ2 334 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 ZBTB14O43829 449 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 IGLV3-19P01714 112 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 IGHV3-48P01763 117 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 CXCL10P02778 98 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 DLSTP36957 453 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 CTRLP40313 264 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 NOVA1P51513 510 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 MNAT1P51948 309 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 APOC4P55056 127 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 RPL8P62917 257 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 MYBPC1Q00872 1141 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 SLC10A7Q0GE19 358 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ST3GAL3Q11203 375 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ZNF154Q13106 437 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 OR8G2PQ6IF36 304 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 STAC2Q6ZMT1 411 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ZFP2Q6ZN57 461 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ARCQ7LC44 396 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 SYVN1Q86TM6 617 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 SERPINA9Q86WD7 417 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 SKA3Q8IX90 412 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ZNF740Q8NDX6 193 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 OR9A4Q8NGU2 314 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 OR2L8Q8NGY9 312 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 M1APQ8TC57 530 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 OR1E3Q8WZA6 343 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 SLC25A36Q96CQ1 311 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ATP6V0BQ99437 205 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 NAP1L3Q99457 506 aaPredicted RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 ARHGDIGQ99819 225 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 PELOQ9BRX2 385 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 XPO4Q9C0E2 1151 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 COG4Q9H9E3 785 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 CAB39LQ9H9S4 337 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 PLGRKTQ9HBL7 147 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 ARGLU1Q9NWB6 273 aaPredicted RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 PAK1IP1Q9NWT1 392 aaPredicted RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 CNOT2Q9NZN8 540 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 EIF3LQ9Y262 564 aaKnown RBP1.62□□□□□ -2.15
VPS35-207ENST00000568191 TRIOBPQ9H2D6 2365 aa1.62□□□□□ -2.15
VPS35-207ENST00000568191 RNF222A6NCQ9 220 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 HELTA6NFD8 242 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 GJE1A6NN92 205 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 H3BTX0 84 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 PES1O00541 588 aaKnown RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 ALOX15BO15296 676 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 AKR7A3O95154 331 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 PCCAP05165 728 aaPredicted RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 TSPY4P0CV99 314 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 TSPY10P0CW01 314 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 BCKDHAP12694 445 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 GCFC2P16383 781 aaKnown RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 TBPP20226 339 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 OAS2P29728 719 aaKnown RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 SFNP31947 248 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 ZNF136P52737 540 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 MAP2K1Q02750 393 aaPredicted RBP1.61□□□□□ -2.15
VPS35-207ENST00000568191 CBX3Q13185 183 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 CHI3L2Q15782 390 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 PAGE3Q5JUK9 113 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 SLC10A5Q5PT55 438 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 IGFL1Q6UW32 110 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 FAM159AQ6UWV7 190 aa1.61□□□□□ -2.15
VPS35-207ENST00000568191 PAQR9Q6ZVX9 377 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms