RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR56A1Q8NGH5 318 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 PIGXQ8TBF5 258 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 DNAJA4Q8WW22 397 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ACOT12Q8WYK0 555 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SENP5Q96HI0 755 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ARHGDIGQ99819 225 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 C17orf62Q9BQA9 187 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 GTPBP2Q9BX10 602 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 KCNN2Q9H2S1 579 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 C6orf106Q9H6K1 298 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 A0A0G2JN53 185 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 WASHC1A8K0Z3 465 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SURF4O15260 269 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 OR5F1O95221 314 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 IGHA1P01876 353 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SERPIND1P05546 499 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ACP5P13686 325 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 AVPR1BP47901 424 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 RRAS2P62070 204 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 CSNK1G2P78368 415 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 TMEM35AQ53FP2 167 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SHEQ5VZ18 495 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 WASH2PQ6VEQ5 465 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 GLCCI1Q86VQ1 547 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 CADM2Q8N3J6 435 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 TTLQ8NG68 377 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 DIO2Q92813 273 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 UPRTQ96BW1 309 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 FAM46AQ96IP4 442 aaKnown RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 DCLRE1CQ96SD1 692 aaKnown RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF649Q9BS31 505 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 C1QTNF7Q9BXJ2 289 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 CHRDQ9H2X0 955 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 TM7SF3Q9NS93 570 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 NUP50Q9UKX7 468 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ZDBF2Q9HCK1 2354 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ERAL1O75616 437 aaKnown RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 NCR1O76036 304 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 PDGFBP01127 241 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 IGLV3-19P01714 112 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ARSBP15848 533 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 FPR3P25089 353 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 AP2S1P53680 142 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 MAB21L1Q13394 359 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SLC30A6Q6NXT4 461 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF793Q6ZN11 406 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 TRILQ7L0X0 811 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 LRRTM4Q86VH4 590 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ELMOD2Q8IZ81 293 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 DEDD2Q8WXF8 326 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 CLDN23Q96B33 292 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 CREB3L1Q96BA8 519 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 REPIN1Q9BWE0 567 aaKnown RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 PRR14Q9BWN1 585 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 JAM3Q9BX67 310 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 QRSL1Q9H0R6 528 aaKnown RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SEMA4GQ9NTN9 838 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SLC39A1Q9NY26 324 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SIT1Q9Y3P8 196 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 ABCA7Q8IZY2 2146 aa12.33□□□□□ -0.44
VPS4A-204ENST00000566354 SHISA3A0PJX4 238 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 GLOD5A6NK44 160 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 AGRPO00253 132 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 PPM1DO15297 605 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 HMGN1P05114 100 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 GNSP15586 552 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 HTR1FP30939 366 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ATP6V1E1P36543 226 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 HTR2BP41595 481 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 PRR5P85299 388 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 TGM3Q08188 693 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 DECR1Q16698 335 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CREB3L2Q70SY1 520 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ADCK2Q7Z695 626 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ABI3BPQ7Z7G0 1075 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 SPEM1Q8N4L4 309 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 RAB42Q8N4Z0 105 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 SPRYD4Q8WW59 207 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ACOT11Q8WXI4 607 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 GPR174Q9BXC1 333 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 RNF32Q9H0A6 362 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 PHPT1Q9NRX4 125 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 WSB2Q9NYS7 404 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CALML5Q9NZT1 146 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 EMC3Q9P0I2 261 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 H2AFY2Q9P0M6 372 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CDH10Q9Y6N8 788 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 TECTAO75443 2155 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CPSF4LA6NMK7 179 aaKnown RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ISM1B1AKI9 464 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 INMT-MINDY4F8WBC2 141 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ERVH48-1M5A8F1 160 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CH25HO95992 272 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 IGHV4-34P06331 123 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF16P17020 682 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 TEAD1P28347 426 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 EVI2BP34910 448 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 RNF144AP50876 292 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CTBP2P56545 445 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms