RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TRILQ7L0X0 811 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 MTERF4Q7Z6M4 381 aaKnown RBP15.67■□□□□ 0.1
CLN3-217ENST00000565354 YRDCQ86U90 279 aaKnown RBP15.67■□□□□ 0.1
CLN3-217ENST00000565354 MSRB3Q8IXL7 192 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 TMCO5AQ8N6Q1 288 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 POU5F2Q8N7G0 328 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 FAM83FQ8NEG4 500 aaPredicted RBP15.67■□□□□ 0.1
CLN3-217ENST00000565354 OR2M3Q8NG83 312 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 RP9Q8TA86 221 aaKnown RBP15.67■□□□□ 0.1
CLN3-217ENST00000565354 NTNG2Q96CW9 530 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 SH3YL1Q96HL8 342 aaPredicted RBP15.67■□□□□ 0.1
CLN3-217ENST00000565354 CCT8L2Q96SF2 557 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 UBQLN3Q9H347 655 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 MCCC2Q9HCC0 563 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 ACKR4Q9NPB9 350 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 GID8Q9NWU2 228 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 TINAGQ9UJW2 476 aa15.67■□□□□ 0.1
CLN3-217ENST00000565354 TRBV5-3A0A0A0MS03 114 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 C17orf51A8MQB3 221 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 NPIPA2E9PIF3 369 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 NPIPA3F8WFD2 350 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 FBP2O00757 339 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 HCRTR2O43614 444 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 SUSD5O60279 629 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 TNFRSF21O75509 655 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 CYP7B1O75881 506 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 DCTN3O75935 186 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 NUDT14O95848 222 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 GUSBP08236 651 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 COX4I1P13073 169 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 HK1P19367 917 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 MSX1P28360 303 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 SRD5A2P31213 254 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 CHRNEQ04844 493 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 CAPRIN1Q14444 709 aaKnown RBP15.66■□□□□ 0.1
CLN3-217ENST00000565354 GANABQ14697 944 aaKnown RBP15.66■□□□□ 0.1
CLN3-217ENST00000565354 KLHL26Q53HC5 615 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 EIPR1Q53HC9 387 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 WIPI1Q5MNZ9 446 aaPredicted RBP15.66■□□□□ 0.1
CLN3-217ENST00000565354 GKAP1Q5VSY0 366 aaPredicted RBP15.66■□□□□ 0.1
CLN3-217ENST00000565354 FRRS1Q6ZNA5 592 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 PIGWQ7Z7B1 504 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 SPPL2CQ8IUH8 684 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 B4GALNT2Q8NHY0 566 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 NEIL3Q8TAT5 605 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 SARAFQ96BY9 339 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 ANKRD27Q96NW4 1050 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 CPPED1Q9BRF8 314 aaPredicted RBP15.66■□□□□ 0.1
CLN3-217ENST00000565354 CCDC106Q9BWC9 280 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 RTN4RQ9BZR6 473 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 PLSCR2Q9NRY7 297 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 TAS2R10Q9NYW0 307 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 ACAD8Q9UKU7 415 aa15.66■□□□□ 0.1
CLN3-217ENST00000565354 ZNF469Q96JG9 3925 aaPredicted RBP15.65■□□□□ 0.1
CLN3-217ENST00000565354 PRAMEF27A3QJZ7 478 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 SERINC4A6NH21 518 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 AQP7O14520 342 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 ZNHIT1O43257 154 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 UGT2B17O75795 530 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 FAM107AO95990 144 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 CHRM4P08173 479 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 UBL4AP11441 157 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 MTPNP58546 118 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 CD226Q15762 336 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 ZNF141Q15928 474 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 CYP51A1Q16850 503 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 WLSQ5T9L3 541 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 IFNEQ86WN2 208 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 PEX5LQ8IYB4 626 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 FADS6Q8N9I5 356 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 OIT3Q8WWZ8 545 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 RCN3Q96D15 328 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 CMTM5Q96DZ9 223 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 TMEM19Q96HH6 336 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 SH3GL1Q99961 368 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 OR2B2Q9GZK3 357 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 SLC38A1Q9H2H9 487 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.65■□□□□ 0.1
CLN3-217ENST00000565354 CARD8Q9Y2G2 431 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 RPH3AQ9Y2J0 694 aaPredicted RBP15.65■□□□□ 0.1
CLN3-217ENST00000565354 ZNF835Q9Y2P0 537 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 SLC6A5Q9Y345 797 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 HRH3Q9Y5N1 445 aa15.65■□□□□ 0.1
CLN3-217ENST00000565354 A0A1B0GVC2 190 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 OR14I1A6ND48 311 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 NPIPB9F8W1W9 429 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 BCKDKO14874 412 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 SHOX2O60902 331 aaPredicted RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 CSTAP01040 98 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 NPPAP01160 153 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 NUDT7P0C024 238 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 IL7RP16871 459 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 CCR4P51679 360 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 ZNF41P51814 821 aaPredicted RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 RAET1LQ5VY80 246 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 Q6ZPB1 254 aaPredicted RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 EIF3MQ7L2H7 374 aaKnown RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 HMGN2P46Q86SG4 172 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 CD163Q86VB7 1156 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 EID3Q8N140 333 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms