RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 BANPQ8N9N5 519 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 OSTF1Q92882 214 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 OTUB1Q96FW1 271 aaPredicted RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 KLHL15Q96M94 604 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 Q96MF0 132 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 TMEM204Q9BSN7 226 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 BDH2Q9BUT1 245 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 TMEM185BQ9H7F4 350 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 FANCFQ9NPI8 374 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 ZCCHC3Q9NUD5 404 aaKnown RBP15.29■□□□□ 0.04
CLN3-216ENST00000565316 GPR52Q9Y2T5 361 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 ACTL7BQ9Y614 415 aa15.29■□□□□ 0.04
CLN3-216ENST00000565316 TMEM114B3SHH9 223 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 PIP5K1BO14986 540 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 EFNA2O43921 213 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 TMCC2O75069 709 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 LAMP1P11279 417 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 PSMB1P20618 241 aaKnown RBP15.28■□□□□ 0.04
CLN3-216ENST00000565316 ELK4P28324 431 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 ADH6P28332 368 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 AGTR1P30556 359 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 ALDH3A1P30838 453 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 RPL3P39023 403 aaKnown RBP15.28■□□□□ 0.04
CLN3-216ENST00000565316 NR1H2P55055 460 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 CARD18P57730 90 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 ZNF117Q03924 483 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 LASP1Q14847 261 aaKnown RBP15.28■□□□□ 0.04
CLN3-216ENST00000565316 KLHL26Q53HC5 615 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 XKR7Q5GH72 579 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 GTF2IRD2BQ6EKJ0 949 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 CDC73Q6P1J9 531 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 PLEKHM3Q6ZWE6 761 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 GTF2IRD2Q86UP8 949 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 LILRA2Q8N149 483 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 OR7A2PQ8NGA2 310 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.28■□□□□ 0.045e-8■■■■■ 65.3
CLN3-216ENST00000565316 OR5P2Q8WZ92 322 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 JADE3Q92613 823 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 CDS1Q92903 461 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 PERPQ96FX8 193 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 APOPT1Q96IL0 206 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 PPP3R2Q96LZ3 170 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 HOXD1Q9GZZ0 328 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 ICAM5Q9UMF0 924 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 DSCAMO60469 2012 aa15.28■□□□□ 0.04
CLN3-216ENST00000565316 NPIPB9F8W1W9 429 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 SOX30O94993 753 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 TUBBP07437 444 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 PABPC4LP0CB38 370 aaKnown RBP15.27■□□□□ 0.04
CLN3-216ENST00000565316 MAPK1P28482 360 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 SHC1P29353 583 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 PTH2RP49190 550 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 ZNF239Q16600 458 aaKnown RBP15.27■□□□□ 0.04
CLN3-216ENST00000565316 ZNF704Q6ZNC4 412 aaPredicted RBP15.27■□□□□ 0.04
CLN3-216ENST00000565316 STK32CQ86UX6 486 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 NATD1Q8N6N6 113 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 RNF128Q8TEB7 428 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 COQ8BQ96D53 544 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 ACTRT3Q9BYD9 372 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 ACTR6Q9GZN1 396 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 EML4Q9HC35 981 aaKnown RBP15.27■□□□□ 0.04
CLN3-216ENST00000565316 ZNF701Q9NV72 531 aaPredicted RBP15.27■□□□□ 0.04
CLN3-216ENST00000565316 GPATCH2Q9NW75 528 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 GIMAP2Q9UG22 337 aa15.27■□□□□ 0.04
CLN3-216ENST00000565316 HIVEP2P31629 2446 aa15.27■□□□□ 0.03
CLN3-216ENST00000565316 UQCRHLA0A096LP55 91 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 ZNF195O14628 629 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 OIP5O43482 229 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 LYPLA1O75608 230 aaPredicted RBP15.26■□□□□ 0.03
CLN3-216ENST00000565316 CCT3P49368 545 aaKnown RBP15.26■□□□□ 0.03
CLN3-216ENST00000565316 SUMO3P55854 103 aaPredicted RBP15.26■□□□□ 0.03
CLN3-216ENST00000565316 FOXF1Q12946 379 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 PTGR1Q14914 329 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLN3-216ENST00000565316 CBLN3Q6UW01 205 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 ZNF527Q8NB42 609 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 OR56A1Q8NGH5 318 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 PHOSPHO1Q8TCT1 267 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 GPR119Q8TDV5 335 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 ROBO4Q8WZ75 1007 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 PLPPR2Q96GM1 343 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 SRXN1Q9BYN0 137 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 CXorf36Q9H7Y0 433 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 GP6Q9HCN6 339 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 TIGARQ9NQ88 270 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 SNX8Q9Y5X2 465 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 PRR14LQ5THK1 2151 aa15.26■□□□□ 0.03
CLN3-216ENST00000565316 TRIM64A6NGJ6 449 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 TRIM64BA6NI03 449 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 HS3ST1O14792 307 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 PEX11AO75192 247 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 GCM2O75603 506 aaPredicted RBP15.25■□□□□ 0.03
CLN3-216ENST00000565316 NTN1O95631 604 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 PLAUP00749 431 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 KRT16P08779 473 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 ATP6V1C1P21283 382 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 ARRB2P32121 409 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 SFTPDP35247 375 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 SERPINB5P36952 375 aa15.25■□□□□ 0.03
CLN3-216ENST00000565316 P2RX1P51575 399 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms