RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SONP18583 2426 aaKnown RBP15.03■□□□□ -0
CLN3-211ENST00000564091 CLOCKO15516 846 aa15.02■□□□□ -0
CLN3-211ENST00000564091 OIP5O43482 229 aa15.02■□□□□ -0
CLN3-211ENST00000564091 CRHR1P34998 444 aa15.02■□□□□ -0
CLN3-211ENST00000564091 PDE7AQ13946 482 aa15.02■□□□□ -0
CLN3-211ENST00000564091 ZNF239Q16600 458 aaKnown RBP15.02■□□□□ -0
CLN3-211ENST00000564091 CCDC153Q494R4 210 aa15.02■□□□□ -0
CLN3-211ENST00000564091 ATG4DQ86TL0 474 aaPredicted RBP15.02■□□□□ -0
CLN3-211ENST00000564091 MISPQ8IVT2 679 aa15.02■□□□□ -0
CLN3-211ENST00000564091 TUSC5Q8IXB3 177 aa15.02■□□□□ -0
CLN3-211ENST00000564091 GSPT2Q8IYD1 628 aaKnown RBP15.02■□□□□ -0
CLN3-211ENST00000564091 ZNF619Q8N2I2 560 aa15.02■□□□□ -0
CLN3-211ENST00000564091 STEAP2Q8NFT2 490 aa15.02■□□□□ -0
CLN3-211ENST00000564091 NEUROG1Q92886 237 aa15.02■□□□□ -0
CLN3-211ENST00000564091 FAM120BQ96EK7 910 aaKnown RBP15.02■□□□□ -0
CLN3-211ENST00000564091 CHMP6Q96FZ7 201 aa15.02■□□□□ -0
CLN3-211ENST00000564091 TACO1Q9BSH4 297 aaKnown RBP15.02■□□□□ -0
CLN3-211ENST00000564091 OR10A4Q9H209 315 aa15.02■□□□□ -0
CLN3-211ENST00000564091 GIN1Q9NXP7 522 aa15.02■□□□□ -0
CLN3-211ENST00000564091 STAB1Q9NY15 2570 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 NPIPA5A0A0B4J1W7 369 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 A0A1W2PQD3 144 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 RNF223E7ERA6 249 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 NPIPA7E9PJI5 369 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 TMCC2O75069 709 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 GCM2O75603 506 aaPredicted RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 SHBGP04278 402 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 SOD3P08294 240 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 NPIPA8P0DM63 369 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 LCN1P31025 176 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 SERPINB4P48594 390 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 RPS4XP62701 263 aaKnown RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 POU6F2P78424 691 aaPredicted RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 ZNF117Q03924 483 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 KRTAP1-1Q07627 177 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 LASP1Q14847 261 aaKnown RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 EXOSC6Q5RKV6 272 aaKnown RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 TMEM201Q5SNT2 666 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 LIPMQ5VYY2 423 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 ZCCHC12Q6PEW1 402 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 CBLN3Q6UW01 205 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 LRIG3Q6UXM1 1119 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 TFAP2EQ6VUC0 442 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 C10orf107Q8IVU9 208 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 GABRG1Q8N1C3 465 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 ATP6V1C2Q8NEY4 427 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 FBXO27Q8NI29 283 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 PHOSPHO1Q8TCT1 267 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 RNF128Q8TEB7 428 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 CDS1Q92903 461 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 REXO5Q96IC2 774 aaKnown RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 RHOXF2Q9BQY4 288 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 BTBD2Q9BX70 525 aa15.01□□□□□ -0.01
CLN3-211ENST00000564091 SIRT3Q9NTG7 399 aaPredicted RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 ZCCHC3Q9NUD5 404 aaKnown RBP15.01□□□□□ -0.01
CLN3-211ENST00000564091 PRR14LQ5THK1 2151 aa15□□□□□ -0.01
CLN3-211ENST00000564091 SMIM23A6NLE4 172 aa15□□□□□ -0.01
CLN3-211ENST00000564091 ZNF195O14628 629 aa15□□□□□ -0.01
CLN3-211ENST00000564091 LSM1O15116 133 aaKnown RBP15□□□□□ -0.01
CLN3-211ENST00000564091 NUDT14O95848 222 aa15□□□□□ -0.01
CLN3-211ENST00000564091 HMGN2P05204 90 aaKnown RBP15□□□□□ -0.01
CLN3-211ENST00000564091 PABPC4LP0CB38 370 aaKnown RBP15□□□□□ -0.01
CLN3-211ENST00000564091 BCKDHAP12694 445 aa15□□□□□ -0.01
CLN3-211ENST00000564091 IL32P24001 234 aa15□□□□□ -0.01
CLN3-211ENST00000564091 EIF1P41567 113 aaKnown RBP15□□□□□ -0.01
CLN3-211ENST00000564091 VEZF1Q14119 521 aa15□□□□□ -0.01
CLN3-211ENST00000564091 TAB1Q15750 504 aa15□□□□□ -0.01
CLN3-211ENST00000564091 TOMM34Q15785 309 aaPredicted RBP15□□□□□ -0.01
CLN3-211ENST00000564091 CLEC12BQ2HXU8 276 aa15□□□□□ -0.01
CLN3-211ENST00000564091 NDUFAF6Q330K2 333 aa15□□□□□ -0.01
CLN3-211ENST00000564091 TMEM176BQ3YBM2 270 aaPredicted RBP15□□□□□ -0.01
CLN3-211ENST00000564091 GALNTL6Q49A17 601 aa15□□□□□ -0.01
CLN3-211ENST00000564091 ZNF524Q96C55 264 aa15□□□□□ -0.01
CLN3-211ENST00000564091 GATA5Q9BWX5 397 aaPredicted RBP15□□□□□ -0.01
CLN3-211ENST00000564091 HDHD5Q9BXW7 423 aa15□□□□□ -0.01
CLN3-211ENST00000564091 TIGARQ9NQ88 270 aa15□□□□□ -0.01
CLN3-211ENST00000564091 KLHL13Q9P2N7 655 aa15□□□□□ -0.01
CLN3-211ENST00000564091 GIMAP2Q9UG22 337 aa15□□□□□ -0.01
CLN3-211ENST00000564091 CARD8Q9Y2G2 431 aa15□□□□□ -0.01
CLN3-211ENST00000564091 RNF115Q9Y4L5 304 aa15□□□□□ -0.01
CLN3-211ENST00000564091 DNAJC15Q9Y5T4 150 aa15□□□□□ -0.01
CLN3-211ENST00000564091 SNX8Q9Y5X2 465 aa15□□□□□ -0.01
CLN3-211ENST00000564091 DSCAMO60469 2012 aa15□□□□□ -0.01
CLN3-211ENST00000564091 PCNX3Q9H6A9 2034 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 TMEM233B4DJY2 109 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 OVOL3O00110 214 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 COPEO14579 308 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 SOX30O94993 753 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 ADAP00813 363 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 CD3EP07766 207 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 NEFHP12036 1026 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 ENPP1P22413 925 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 CDKN1AP38936 164 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 RNPS1Q15287 305 aaKnown RBP14.99□□□□□ -0.01
CLN3-211ENST00000564091 NCMAPQ5T1S8 102 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 SFRP5Q5T4F7 317 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 KANK2Q63ZY3 851 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 ADAM5Q6NVV9 412 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 FCRLAQ7L513 359 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 DDIASQ8IXT1 998 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms