RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 IFFO1Q0D2I5 559 aa17■□□□□ 0.31
VPS35-202ENST00000561713 FOXF1Q12946 379 aa17■□□□□ 0.31
VPS35-202ENST00000561713 GLYR1Q49A26 553 aaPredicted RBP17■□□□□ 0.31
VPS35-202ENST00000561713 C20orf204Q6ZNR8 217 aa17■□□□□ 0.31
VPS35-202ENST00000561713 GTPBP8Q8N3Z3 284 aaPredicted RBP17■□□□□ 0.31
VPS35-202ENST00000561713 RIBC1Q8N443 379 aaPredicted RBP17■□□□□ 0.31
VPS35-202ENST00000561713 OR5AK3PQ8NH89 298 aa17■□□□□ 0.31
VPS35-202ENST00000561713 POC1BQ8TC44 478 aa17■□□□□ 0.31
VPS35-202ENST00000561713 FAM110BQ8TC76 370 aa17■□□□□ 0.31
VPS35-202ENST00000561713 ZBTB9Q96C00 473 aa17■□□□□ 0.31
VPS35-202ENST00000561713 ADGRG7Q96K78 797 aa17■□□□□ 0.31
VPS35-202ENST00000561713 PKNOX2Q96KN3 472 aa17■□□□□ 0.31
VPS35-202ENST00000561713 PPP3R2Q96LZ3 170 aa17■□□□□ 0.31
VPS35-202ENST00000561713 PRRG4Q9BZD6 226 aa17■□□□□ 0.31
VPS35-202ENST00000561713 LGALS13Q9UHV8 139 aa17■□□□□ 0.31
VPS35-202ENST00000561713 ATP6V1HQ9UI12 483 aa17■□□□□ 0.31
VPS35-202ENST00000561713 KCNE3Q9Y6H6 103 aa17■□□□□ 0.31
VPS35-202ENST00000561713 USF3Q68DE3 2245 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 SCDO00767 359 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 LYPLA1O75608 230 aaPredicted RBP16.99■□□□□ 0.31
VPS35-202ENST00000561713 PLGP00747 810 aaPredicted RBP16.99■□□□□ 0.31
VPS35-202ENST00000561713 NGFRP08138 427 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 HPGDP15428 266 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 PSMA4P25789 261 aaKnown RBP16.99■□□□□ 0.31
VPS35-202ENST00000561713 SFTPDP35247 375 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 SOAT1P35610 550 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 PTH2RP49190 550 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 ZNF117Q03924 483 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 ATP6AP1LQ52LC2 224 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 FAM214BQ7L5A3 538 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 R3HCC1LQ7Z5L2 792 aaKnown RBP16.99■□□□□ 0.31
VPS35-202ENST00000561713 FNDC5Q8NAU1 212 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 OR6Y1Q8NGX8 325 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 MTERF3Q96E29 417 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 PPP1R36Q96LQ0 422 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 BTBD2Q9BX70 525 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 GSX2Q9BZM3 304 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 EML4Q9HC35 981 aaKnown RBP16.99■□□□□ 0.31
VPS35-202ENST00000561713 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.99■□□□□ 0.31
VPS35-202ENST00000561713 ZDHHC2Q9UIJ5 367 aa16.99■□□□□ 0.31
VPS35-202ENST00000561713 V9GYY5 206 aaPredicted RBP16.99■□□□□ 0.31
VPS35-202ENST00000561713 A0A087WZY1 265 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 A0A0J9YW62 118 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 TMEM114B3SHH9 223 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 C16orf97H3BN30 126 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 FGF4P08620 206 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 CD8BP10966 210 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 MAPK1P28482 360 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 RPS26P62854 115 aaKnown RBP16.98■□□□□ 0.31
VPS35-202ENST00000561713 SPDYE7PQ495Y7 208 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 C6orf136Q5SQH8 315 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.98■□□□□ 0.31
VPS35-202ENST00000561713 IL23RQ5VWK5 629 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 CDC73Q6P1J9 531 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 OLIG3Q7RTU3 272 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 LSRQ86X29 649 aaPredicted RBP16.98■□□□□ 0.31
VPS35-202ENST00000561713 WDR75Q8IWA0 830 aaKnown RBP16.98■□□□□ 0.31
VPS35-202ENST00000561713 CLEC4FQ8N1N0 589 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 ZNF614Q8N883 585 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 OR5D16Q8NGK9 328 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 OR2V1Q8NHB1 315 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 B4GALNT2Q8NHY0 566 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 PHOSPHO1Q8TCT1 267 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 ZBTB8AQ96BR9 441 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 SLC39A3Q9BRY0 314 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 C12orf49Q9H741 205 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 UBQLN4Q9NRR5 601 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 ELOVL5Q9NYP7 299 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 EMC9Q9Y3B6 208 aa16.98■□□□□ 0.31
VPS35-202ENST00000561713 CTBP2P56545 445 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 DCST2Q5T1A1 773 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 CPTPQ5TA50 214 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 HBMQ6B0K9 141 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 CBLN3Q6UW01 205 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 OR6K3Q8NGY3 331 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 AENQ8WTP8 325 aaKnown RBP16.97■□□□□ 0.31
VPS35-202ENST00000561713 IGFBPL1Q8WX77 278 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 GPATCH2Q9NW75 528 aa16.97■□□□□ 0.31
VPS35-202ENST00000561713 MCTS1Q9ULC4 181 aaKnown RBP16.97■□□□□ 0.31
VPS35-202ENST00000561713 C7orf72A4D263 438 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 SS18L1O75177 396 aaPredicted RBP16.96■□□□□ 0.31
VPS35-202ENST00000561713 SYNGR4O95473 234 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 NUDT14O95848 222 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 THBDP07204 575 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 LINGO3P0C6S8 592 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 NID1P14543 1247 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 ATP6V1C1P21283 382 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 SERPINB4P48594 390 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 CCT3P49368 545 aaKnown RBP16.96■□□□□ 0.31
VPS35-202ENST00000561713 MLC1Q15049 377 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 TOMM34Q15785 309 aaPredicted RBP16.96■□□□□ 0.31
VPS35-202ENST00000561713 PDCD2Q16342 344 aaPredicted RBP16.96■□□□□ 0.31
VPS35-202ENST00000561713 LRIG3Q6UXM1 1119 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 PLEKHM3Q6ZWE6 761 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 OR56A1Q8NGH5 318 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 ABHD3Q8WU67 409 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.96■□□□□ 0.31
VPS35-202ENST00000561713 ROBO4Q8WZ75 1007 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 OR5P2Q8WZ92 322 aa16.96■□□□□ 0.31
VPS35-202ENST00000561713 ZNF524Q96C55 264 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms