RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 DNAJC14Q6Y2X3 702 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 FRMD7Q6ZUT3 714 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 R3HCC1LQ7Z5L2 792 aaKnown RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TUSC5Q8IXB3 177 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 IFT20Q8IY31 132 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 GABRG1Q8N1C3 465 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 COX18Q8N8Q8 333 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF527Q8NB42 609 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 NOA1Q8NC60 698 aaKnown RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 SLC16A11Q8NCK7 471 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 RAB3IL1Q8TBN0 382 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 PHOSPHO1Q8TCT1 267 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 RNF128Q8TEB7 428 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 JADE3Q92613 823 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 KISS1RQ969F8 398 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 CIDECQ96AQ7 238 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 MTERF3Q96E29 417 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 CHMP6Q96FZ7 201 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 SH3YL1Q96HL8 342 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 CCT7Q99832 543 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 BTBD2Q9BX70 525 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TMEM185BQ9H7F4 350 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 BARX1Q9HBU1 254 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 GIN1Q9NXP7 522 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 KLHL13Q9P2N7 655 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 PSMC3IPQ9P2W1 217 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TBK1Q9UHD2 729 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 LIPT1Q9Y234 373 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TMED5Q9Y3A6 229 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 CCL27Q9Y4X3 112 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 GPC6Q9Y625 555 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 RAI1Q7Z5J4 1906 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TLN2Q9Y4G6 2542 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 NSD1Q96L73 2696 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 KIF2AO00139 706 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 GTPBP1O00178 669 aaKnown RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 GCM2O75603 506 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ADAP00813 363 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 LINGO3P0C6S8 592 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 DANCRP0C864 163 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ACP2P11117 423 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 NEFHP12036 1026 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 NID1P14543 1247 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 CPA3P15088 417 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 SFTPDP35247 375 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 FRKP42685 505 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ASMTP46597 345 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 P2RX1P51575 399 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 SUMO3P55854 103 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 TAB1Q15750 504 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF239Q16600 458 aaKnown RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 DUSP5Q16690 384 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF672Q499Z4 452 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ANKRD26P1Q6NSI1 321 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 HMBOX1Q6NT76 420 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 TFAP2EQ6VUC0 442 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 FCRLAQ7L513 359 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 NUFIP2Q7Z417 695 aaKnown RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 CCDC63Q8NA47 563 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 LILRB1Q8NHL6 650 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 POC1BQ8TC44 478 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 PIWIL2Q8TC59 973 aaKnown RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ABHD3Q8WU67 409 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 MUCL1Q96DR8 90 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 GIMAP5Q96F15 307 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 C16orf58Q96GQ5 468 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 TSSK3Q96PN8 268 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 STACQ99469 402 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 NPAS1Q99742 590 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 POTEKPQ9BYX7 375 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 PIGUQ9H490 435 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ALG2Q9H553 416 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 DUSP22Q9NRW4 184 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 ZCCHC3Q9NUD5 404 aaKnown RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 FAIMQ9NVQ4 179 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 OXSMQ9NWU1 459 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 KLHL9Q9P2J3 617 aa8.16□□□□□ -1.1
HDDC3-204ENST00000559834 FAF1Q9UNN5 650 aaPredicted RBP8.16□□□□□ -1.1
HDDC3-204ENST00000559834 A0A1W2PPM1 405 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 TMEM114B3SHH9 223 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 AZIN1O14977 448 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 CD5LO43866 347 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 PROCP04070 461 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 HMGN2P05204 90 aaKnown RBP8.15□□□□□ -1.1
HDDC3-204ENST00000559834 SOD3P08294 240 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 KRT16P08779 473 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 SDC1P18827 310 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 CRHR1P34998 444 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 RPL3P39023 403 aaKnown RBP8.15□□□□□ -1.1
HDDC3-204ENST00000559834 RAC3P60763 192 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF844Q08AG5 666 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 PDE7AQ13946 482 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 MLC1Q15049 377 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 CD226Q15762 336 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 RFTN2Q52LD8 501 aaPredicted RBP8.15□□□□□ -1.1
HDDC3-204ENST00000559834 KLHL26Q53HC5 615 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF385BQ569K4 471 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 CCNJQ5T5M9 372 aa8.15□□□□□ -1.1
HDDC3-204ENST00000559834 CLEC6AQ6EIG7 209 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms