RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CHMP6Q96FZ7 201 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 SLC35G5Q96KT7 338 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 CRIM1Q9NZV1 1036 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 ICAM5Q9UMF0 924 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 VDAC3Q9Y277 283 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 DTNAQ9Y4J8 743 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 KCNE3Q9Y6H6 103 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 A8MXE2 369 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 EIF4E2O60573 245 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 STX11O75558 287 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 NTN1O95631 604 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 IDO1P14902 403 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 TCEA1P23193 301 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 S100A3P33764 101 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 P2RX1P51575 399 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 CTU2Q2VPK5 515 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 SLC25A53Q5H9E4 307 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 ESPNLQ6ZVH7 1005 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 CDH24Q86UP0 819 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 UBQLNLQ8IYU4 475 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 GCNT2Q8N0V5 402 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 GATSQ8NAP1 163 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 PIWIL2Q8TC59 973 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 PHOSPHO1Q8TCT1 267 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 MGARPQ8TDB4 240 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 TEX37Q96LM6 180 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 RNF145Q96MT1 663 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 SAP130Q9H0E3 1048 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 EXD2Q9NVH0 621 aa14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 GPC6Q9Y625 555 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-209ENST00000554872 CELSR1Q9NYQ6 3014 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 H0YC42 278 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF195O14628 629 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 SEC14L5O43304 696 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 KIAA0513O60268 411 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 PGRP06401 933 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 CD8BP10966 210 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 NID1P14543 1247 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 ME2P23368 584 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 EPHA3P29320 983 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 MRPL19P49406 292 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 TPD52P55327 224 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 RPS26P62854 115 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 PON3Q15166 354 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 GSTA3Q16772 222 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 PDCD4Q53EL6 469 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 MSANTD1Q6ZTZ1 278 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 P4HA3Q7Z4N8 544 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 TRIML2Q8N7C3 387 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 OR5M1Q8NGP8 315 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 FNDC9Q8TBE3 224 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 POC1BQ8TC44 478 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 FIG4Q92562 907 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 STARD4Q96DR4 205 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 SH3YL1Q96HL8 342 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 C7orf26Q96N11 449 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 RBM24Q9BX46 236 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 PINK1Q9BXM7 581 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 WDR55Q9H6Y2 383 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 SDR39U1Q9NRG7 319 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 GALNT8Q9NY28 637 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 HRNRQ86YZ3 2850 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 AKAP9Q99996 3911 aa14.42□□□□□ -0.1
CCDC88C-209ENST00000554872 SPG11Q96JI7 2443 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 SERINC4A6NH21 518 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 TUBAL3A6NHL2 446 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 A6NNC1 897 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 CGAP01215 116 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 UBL4AP11441 157 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 EPXP11678 715 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 IL12AP29459 219 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 KIR2DL2P43627 348 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 KHKP50053 298 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 AGFG1P52594 562 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 UFM1P61960 85 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 TESK1Q15569 626 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 ATAD3BQ5T9A4 648 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 CBLN3Q6UW01 205 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 PLXDC2Q6UX71 529 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 MAVSQ7Z434 540 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 TMEM200AQ86VY9 491 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 ANKRD46Q86W74 232 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 ZZZ3Q8IYH5 903 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 FAM71CQ8NEG0 241 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 OR5W2Q8NH69 310 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF75CPQ92670 426 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 MRGPRX4Q96LA9 322 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 DACH2Q96NX9 599 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 NPAS1Q99742 590 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 KLHDC3Q9BQ90 382 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 OR51I1Q9H343 314 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 GLRX2Q9NS18 164 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 RASSF1Q9NS23 344 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 ZIM2Q9NZV7 527 aa14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 MARCOQ9UEW3 520 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-209ENST00000554872 SHISA8B8ZZ34 492 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 EIF1AYO14602 144 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF264O43296 627 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 OIP5O43482 229 aa14.4□□□□□ -0.1
CCDC88C-209ENST00000554872 UGT2B17O75795 530 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms